BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0088.0002.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180484.1| hypothetical protein Mther157701 [Moorella th... 271 1e-71 ref|NP_954431.1| branched-chain amino acid ABC transporter, ATP-... 267 2e-70 ref|ZP_00079312.1| COG0410: ABC-type branched-chain amino acid t... 261 7e-69 ref|NP_345252.1| branched-chain amino acid ABC transporter, ATP-... 259 2e-68 ref|NP_358257.1| ABC transporter ATP-binding protein - branched ... 255 5e-67 >ref|ZP_00180484.1| hypothetical protein Mther157701 [Moorella thermoacetica ATCC 39073] Length = 237 Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 136/233 (58%), Positives = 171/233 (73%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 +LKV+ ++VYYGAIHALK +S+EV +GEIVTLIGANGA I F Sbjct: 4 LLKVENLDVYYGAIHALKGISLEVNEGEIVTLIGANGAGKSTTLNTICGLLRPRSGRITF 63 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYLQ-NPSSLAADFERVYKT 119 +++ S +IVK G+ PEGRR+F N++V+ENLELGAYL+ + + + V++ Sbjct: 64 QGQALNGLSAPAIVKLGISQVPEGRRIFPNLTVKENLELGAYLRRDREGIRRSMQDVFRR 123 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ER+KQ AGTLSGGEQQMLA+GRALM PKL+LLDEPSMGLAPLLVQ+IF I+KE+ Sbjct: 124 FPRLEERQKQMAGTLSGGEQQMLAIGRALMSRPKLMLLDEPSMGLAPLLVQEIFNIIKEI 183 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 N GTT+LLVEQNA+ AL +AHR YVLETGR+ L+G A ELA + +K AYLG Sbjct: 184 NQQGTTILLVEQNANMALSVAHRGYVLETGRITLQGKAAELAVNAAVKKAYLG 236 >ref|NP_954431.1| branched-chain amino acid ABC transporter, ATP-binding protein [Geobacter sulfurreducens PCA] gb|AAR36781.1| branched-chain amino acid ABC transporter, ATP-binding protein [Geobacter sulfurreducens PCA] Length = 234 Score = 267 bits (682), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 135/234 (57%), Positives = 169/234 (72%), Gaps = 1/234 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 ML V+ ++V YGAI AL ++S V QGEIV LIGANGA + F Sbjct: 1 MLVVENLSVNYGAIKALVNVSCRVDQGEIVALIGANGAGKTTILNTISSIVPAAAGRVLF 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYLQ-NPSSLAADFERVYKT 119 + IT + IVK+G+ PEGRRVF+ MSV ENLE+GAY++ + +A + ER++ Sbjct: 61 EGEDITKTAPHEIVKRGVCQVPEGRRVFSKMSVLENLEMGAYIRSDKKGIAQEMERIFHL 120 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ERKKQ A TLSGGEQQMLAMGRALM P+LLLLDEPSMGLAP+LV+ IF+I+ E+ Sbjct: 121 FPRLAERKKQLAKTLSGGEQQMLAMGRALMSQPRLLLLDEPSMGLAPMLVEKIFEIIGEI 180 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLGH 233 N GTT++LVEQNAH AL IAHRAYVLETG++VLEG A+ELA++ E++ AYLG Sbjct: 181 NGTGTTIMLVEQNAHMALSIAHRAYVLETGQIVLEGPARELAENPEVRKAYLGE 234 >ref|ZP_00079312.1| COG0410: ABC-type branched-chain amino acid transport systems, ATPase component [Geobacter metallireducens] Length = 247 Score = 261 bits (668), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 136/238 (57%), Positives = 171/238 (71%), Gaps = 6/238 (2%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLK++ IN +YG +HALK++SI +KQGEIVTLIGANGA I F Sbjct: 1 MLKIKNINTFYGKVHALKNISIHLKQGEIVTLIGANGAGKTTILNSISAVTPPATGQIHF 60 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYL-----QNPSSLAADFER 115 D+ I IVK G+ PEGR+VF +SVE+NL+LGAYL + S++ D + Sbjct: 61 DDQDIAGLGPDRIVKLGICQVPEGRQVFKPLSVEDNLDLGAYLRYRGREGRSAIRKDLDD 120 Query: 116 VYKTFPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKI 175 +Y FPRL ER+KQ AGTLSGGEQQMLAMGRALM PKLLLLDEPSMGLAPL+VQ+IF++ Sbjct: 121 MYALFPRLHERRKQAAGTLSGGEQQMLAMGRALMARPKLLLLDEPSMGLAPLVVQEIFRV 180 Query: 176 VKEVNA-AGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 ++++ + GTTVLLVEQNA ALK+A R YVLETG+VVLEG A EL +++E++ AYLG Sbjct: 181 IEQLRSERGTTVLLVEQNAKAALKMADRGYVLETGKVVLEGIASELLENKEVQRAYLG 238 >ref|NP_345252.1| branched-chain amino acid ABC transporter, ATP-binding protein [Streptococcus pneumoniae TIGR4] pir||C95087 hypothetical protein SP0753 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK74892.1| branched-chain amino acid ABC transporter, ATP-binding protein [Streptococcus pneumoniae TIGR4] Length = 236 Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 130/233 (55%), Positives = 164/233 (70%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 MLKV+ ++V+YG I A++D+S EV +GE+V+LIGANGA IEF Sbjct: 3 MLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYLQ-NPSSLAADFERVYKT 119 L + I Q IV GL PEGR VF ++V ENLE+GA+L+ N A+ ++V+ Sbjct: 63 LGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSR 122 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ERK Q A TLSGGEQQMLAMGRALM PKLLLLDEPSMGLAP+ +Q+IF I++++ Sbjct: 123 FPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDI 182 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 GTTVLL+EQNA++AL I+ R YVLETGR+VL G KELA SEE++ AYLG Sbjct: 183 QKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLG 235 >ref|NP_358257.1| ABC transporter ATP-binding protein - branched chain amino acid transport [Streptococcus pneumoniae R6] pir||G97954 hypothetical protein livF [imported] - Streptococcus pneumoniae (strain R6) gb|AAK99467.1| ABC transporter ATP-binding protein - branched chain amino acid transport [Streptococcus pneumoniae R6] Length = 236 Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 128/233 (54%), Positives = 164/233 (70%), Gaps = 1/233 (0%) Query: 1 MLKVQGINVYYGAIHALKDLSIEVKQGEIVTLIGANGAXXXXXXXXXXXXXXXXXXSIEF 60 +LKV+ ++V+YG I A++D+S EV +GE+V+LIGANGA IEF Sbjct: 3 VLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIEF 62 Query: 61 LDKSITNQSVQSIVKQGLIHCPEGRRVFANMSVEENLELGAYLQ-NPSSLAADFERVYKT 119 L + I Q IV GL PEGR VF ++V ENLE+GA+L+ N A+ ++V+ Sbjct: 63 LGQEIQKMPAQKIVAGGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFSR 122 Query: 120 FPRLLERKKQQAGTLSGGEQQMLAMGRALMGHPKLLLLDEPSMGLAPLLVQDIFKIVKEV 179 FPRL ERK Q A TLSGGEQQMLAMGRALM PKLLLLDEPSMGLAP+ +Q+IF I++++ Sbjct: 123 FPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQDI 182 Query: 180 NAAGTTVLLVEQNAHQALKIAHRAYVLETGRVVLEGDAKELADSEEIKMAYLG 232 GTTVLL+EQNA++AL I+ R YVLETG++VL G KELA SEE++ AYLG Sbjct: 183 QKQGTTVLLIEQNANKALAISDRGYVLETGKIVLSGTGKELASSEEVRKAYLG 235 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 281,313,915 Number of extensions: 9688910 Number of successful extensions: 76802 Number of sequences better than 1.0e-05: 10771 Number of HSP's gapped: 72089 Number of HSP's successfully gapped: 11314 Length of query: 233 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 111 Effective length of database: 425,995,500 Effective search space: 47285500500 Effective search space used: 47285500500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)