BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0087.0009.p
         (162 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_825127.1| putative mutT-like protein [Streptomyces avermi...    64   1e-09
ref|NP_628444.1| putative mutT-like protein [Streptomyces coelic...    61   9e-09
ref|ZP_00183883.1| hypothetical protein Exigu064801 [Exiguobacte...    60   1e-08

>ref|NP_825127.1| putative mutT-like protein [Streptomyces avermitilis MA-4680]
 dbj|BAC71662.1| putative mutT-like protein [Streptomyces avermitilis MA-4680]
          Length = 318

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 4/158 (2%)

Query: 7   VPDPMSAESVELQAAILNSQPTFNLMVQHKEHLTPEEIREENKQNLEEMGEKMLLIVEKG 66
           +P P+  E   L AA        +      + + PE++       L     ++LL    G
Sbjct: 14  IPAPLLTELTALYAAHREFH-ALSGDFPDPDDIRPEQVAAALADELANPDVEVLLARSAG 72

Query: 67  KHIGIITYLPSHP--GDKHCWIGLFVLHHGCAGRGIGSIALNALERRLRQENAAQVRLAV 124
           + +G++  L  HP   D   WIGL ++      RG G      +E R R      VRLAV
Sbjct: 73  RLVGVVITLAHHPDPADPDPWIGLLLVAVEEQRRGYGRELAARVEERFRAAGRTAVRLAV 132

Query: 125 QLENLAGAAFWQKNGYVIVKSTQD-QRGNEVDVYEKPL 161
             +N  G AFW   GY +V    D QRG    V  KPL
Sbjct: 133 HDDNPGGLAFWTALGYEVVDHRTDRQRGRPCAVLRKPL 170


>ref|NP_628444.1| putative mutT-like protein [Streptomyces coelicolor A3(2)]
 emb|CAB93032.1| putative mutT-like protein [Streptomyces coelicolor A3(2)]
          Length = 323

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 9/147 (6%)

Query: 7   VPDPMSAESVELQAAILNSQPTFNLM---VQHKEHLTPEEIREENKQNLEEMGEKMLLIV 63
           +P P+  E   L A    S   F+ +       E + PE++       L   G ++LL  
Sbjct: 14  IPGPVLTELTALYA----SHRAFHALSGDFPDPEDIRPEQVATALADELARPGAEVLLAR 69

Query: 64  EKGKHIGIITYLPSHP--GDKHCWIGLFVLHHGCAGRGIGSIALNALERRLRQENAAQVR 121
           + G+ +G+   L  HP   D   WIGL ++  G   +G GS  ++ +E R R      VR
Sbjct: 70  DAGRLVGVAVTLARHPDPSDPDPWIGLLMVDAGLTRQGHGSRLVSLVEDRFRAAGRTAVR 129

Query: 122 LAVQLENLAGAAFWQKNGYVIVKSTQD 148
           LAV   N    +FW   GY ++   +D
Sbjct: 130 LAVLDGNTDALSFWTALGYRVLDHRRD 156


>ref|ZP_00183883.1| hypothetical protein Exigu064801 [Exiguobacterium sp. 255-15]
          Length = 161

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 10  PMSAESVELQAAILNSQPTFNLMVQHKEHLTPEEIREENKQNLEEMGEKMLLIVEKGKHI 69
           P++ +   +  +I    P + + ++ + +L  ++  EE   N + +    LL ++    +
Sbjct: 7   PVTKKDFPIIQSIFAENPHY-VQLEDRIYLLSDDELEEEFLNADTIS---LLCIDGDDVL 62

Query: 70  GIITYLPSHPGDKHCWIGLFVLHHGCAGRGIGSIALNALERRLRQENAAQVRLAVQLENL 129
            +I YLP HP D   WIGLF++      +GIGS+       +  Q +   +RLAV  EN+
Sbjct: 63  ALIDYLPEHPTDHSTWIGLFIMSERLHRQGIGSMIYRMFHEQYLQ-DCPVIRLAVLPENV 121

Query: 130 AGAAFWQ 136
           +G  +W+
Sbjct: 122 SGRRYWE 128


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 235,006,804
Number of extensions: 9027703
Number of successful extensions: 29412
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 29416
Number of HSP's successfully gapped: 3
Length of query: 162
Length of database: 757,237,578
Length adjustment: 116
Effective length of query: 46
Effective length of database: 442,286,094
Effective search space: 20345160324
Effective search space used: 20345160324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 121 (51.2 bits)