BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0026.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691483.1| L-alanoyl-D-glutamate peptidase [Oceanobacillus... 149 5e-35 ref|NP_388163.1| similar to L-alanoyl-D-glutamate peptidase [Bac... 143 2e-33 ref|NP_469473.1| L-alanoyl-D-glutamate peptidase [Bacteriophage ... 123 3e-27 sp|Q37979|AEPE_BPA50 L-alanyl-D-glutamate peptidase >gi|2147616|... 122 4e-27 emb|CAA61519.1| phagelysin [Listeria innocua] 121 1e-26 >ref|NP_691483.1| L-alanoyl-D-glutamate peptidase [Oceanobacillus iheyensis HTE831] dbj|BAC12518.1| L-alanoyl-D-glutamate peptidase (peptideglycan lytic enzyme) [Oceanobacillus iheyensis HTE831] Length = 186 Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 63/127 (49%), Positives = 93/127 (73%), Gaps = 1/127 (0%) Query: 4 LIERCYACGVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALL 63 L+++ + ++IT +R+ QD LYA+GRT G +VT+A+GG+SYHNYGLA+D+A+ Sbjct: 57 LVDQASKKDIDVMITDEVRSKERQDELYARGRTTEGTVVTHAQGGESYHNYGLAIDYAIK 116 Query: 64 LPNGSSVSWDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQMSFGLTLSK 123 NG+ V WD+ DG+N+ +DW EV + AK +GFEWGGDW KDYPH QM+FGL++++ Sbjct: 117 NNNGN-VLWDIHYDGNNNGESDWFEVAEIAKEIGFEWGGDWQHFKDYPHLQMTFGLSINE 175 Query: 124 LRAGAQP 130 L+ G +P Sbjct: 176 LQKGYRP 182 >ref|NP_388163.1| similar to L-alanoyl-D-glutamate peptidase [Bacillus subtilis] pir||F69755 L-alanoyl-D-glutamate peptidase homolog ycdD - Bacillus subtilis dbj|BAA22242.1| YcdD [Bacillus subtilis] emb|CAB12075.1| ycdD [Bacillus subtilis subsp. subtilis str. 168] Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 65/104 (62%), Positives = 79/104 (75%), Gaps = 1/104 (0%) Query: 12 GVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALLLPNGSSVS 71 G+ ++IT+G R+ EQD LY QGRTK G IVT ARGG+SYHNYGLA+DFAL +G S+ Sbjct: 62 GIDVVITEGFRSFKEQDELYKQGRTKKGNIVTYARGGESYHNYGLAIDFALQKKDG-SII 120 Query: 72 WDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQM 115 WDM DG+ + +DWLEVV+ AK LGFEWGGDW KDYPH +M Sbjct: 121 WDMEYDGNQNGKSDWLEVVEIAKTLGFEWGGDWKRFKDYPHLEM 164 >ref|NP_469473.1| L-alanoyl-D-glutamate peptidase [Bacteriophage A500 from Listeria] [Listeria innocua] pir||AI1448 L-alanoyl-D-glutamate peptidase (Bacteriophage A500 from Listeria) [imported] - Listeria innocua (strain Clip11262) emb|CAC95361.1| L-alanoyl-D-glutamate peptidase [Bacteriophage A500 from Listeria] [Listeria innocua] Length = 289 Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 7/126 (5%) Query: 4 LIERCYACGVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALL 63 +I++ G+ + + QG R+ AEQ+ALYAQGRTK GAIVTNA+GGQS HNYG+AVD L Sbjct: 32 VIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLY 91 Query: 64 LPNGSSVSWDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQMSFGLTLSK 123 +G V W+ + W +VV K GF+WGGDW S KDYPHF++ ++ K Sbjct: 92 TNDGKDVIWE-------STTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEK 144 Query: 124 LRAGAQ 129 + A Q Sbjct: 145 IPAATQ 150 >sp|Q37979|AEPE_BPA50 L-alanyl-D-glutamate peptidase pir||S69801 L-alanoyl-D-glutamate peptidase, 33.4K - phage A500 emb|CAA59365.1| L-alanoyl-D-glutamate peptidase [Bacteriophage A500] Length = 289 Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 7/126 (5%) Query: 4 LIERCYACGVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALL 63 +I++ G+ + + QG R+ AEQ+ALYAQGRTK GAIVTNA+GGQS HNYG+AVD L Sbjct: 32 VIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLY 91 Query: 64 LPNGSSVSWDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQMSFGLTLSK 123 +G V W+ + W +VV K GF+WGGDW S KDYPHF++ ++ K Sbjct: 92 TNDGKDVIWE-------STTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEK 144 Query: 124 LRAGAQ 129 + A Q Sbjct: 145 IPAATQ 150 >emb|CAA61519.1| phagelysin [Listeria innocua] Length = 287 Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 78/126 (61%), Gaps = 7/126 (5%) Query: 4 LIERCYACGVPILITQGLRTAAEQDALYAQGRTKSGAIVTNARGGQSYHNYGLAVDFALL 63 +I++ G+ + + QG R+ AEQ+ALYAQGRTK GAIVTNA+GGQS HN+G+AVD L Sbjct: 32 VIKKMAKEGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNFGVAVDLCLY 91 Query: 64 LPNGSSVSWDMARDGDNDQAADWLEVVQQAKRLGFEWGGDWTSLKDYPHFQMSFGLTLSK 123 +G V W+ + W +VV K GFEWGGDW S KDYPHF++ + K Sbjct: 92 TSDGKDVIWE-------STTSRWKKVVAAMKAEGFEWGGDWKSFKDYPHFELCDAASGEK 144 Query: 124 LRAGAQ 129 + Q Sbjct: 145 IPTATQ 150 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 296,467,843 Number of extensions: 11451226 Number of successful extensions: 30649 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 30634 Number of HSP's successfully gapped: 18 Length of query: 207 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 87 Effective length of database: 431,425,698 Effective search space: 37534035726 Effective search space used: 37534035726 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)