BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0019.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782673.1| phage-like element pbsx protein xkdT [Clostridi... 145 4e-34 ref|ZP_00100218.1| hypothetical protein [Desulfitobacterium hafn... 127 1e-28 ref|NP_389156.1| PBSX prophage [Bacillus subtilis] >gi|1722878|s... 75 8e-13 ref|ZP_00145242.1| Phage-like element PBSX protein xkdT [Fusobac... 71 2e-11 ref|NP_390474.1| similar to phage-related protein [Bacillus subt... 70 4e-11 >ref|NP_782673.1| phage-like element pbsx protein xkdT [Clostridium tetani E88] gb|AAO36610.1| phage-like element pbsx protein xkdT [Clostridium tetani E88] Length = 219 Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 109/185 (58%), Gaps = 6/185 (3%) Query: 7 LYGTISYSSSPATQDGP------EFSKPDLMKYLPEYYQGVLEMEQIQDSHAAECGQLAY 60 +YG+I+Y ++ Q+ E +PDL+ YLP + + E + D E L + Sbjct: 1 MYGSINYGANQYGQELETKNKEIELYRPDLLAYLPPVLRQIKEFKVWDDVVGYELALLNW 60 Query: 61 SIEDSALQTNVESATWGLARWEKVLALTTDNTKSYAARREMIKAKLRGSGTTTPEMIRRT 120 ED Q +++ATWGL+ WE + TD KSY RRE++KAK RG GT T ++I+ T Sbjct: 61 KREDLIKQCFIDTATWGLSLWENEYGIETDLNKSYEERREILKAKKRGHGTVTKKLIKET 120 Query: 121 ASAFSGGDVQVVEVPGAYSFEVRFVGTLGIPENMAGLIQIIEEIKPAHLDYKFVYSYTWW 180 A AFSGG+V+++E P +YSF V+F+G GIP+NM ++E IKPAHL Y F + Sbjct: 121 AEAFSGGEVEIIENPESYSFTVKFIGAYGIPKNMGDFKDMLETIKPAHLGYTFEFILITH 180 Query: 181 NSLKS 185 LK+ Sbjct: 181 GMLKN 185 >ref|ZP_00100218.1| hypothetical protein [Desulfitobacterium hafniense] Length = 181 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/177 (38%), Positives = 102/177 (57%), Gaps = 4/177 (2%) Query: 29 DLMKYLPEYYQGVLEMEQIQDSHAAECGQLAYSIEDSALQTNVESATWGLARWEKVLALT 88 +L++ LP Y+ E+ ++Q++ + D Q +V +ATWGL+ WE+ + Sbjct: 3 ELIELLPANYKNSQEVVELQEALGNHIAAATAAKADVFKQLDVNTATWGLSYWEQAYGIK 62 Query: 89 TDNTKSYAARREMIKAKLRGSGTTTPEMIRRTASAFSGGDVQVVEVPGAYSFEVRFVGTL 148 TD KSY RR + +K+RG G+TT MI+ A +FS G+V++ E Y F V+F+G Sbjct: 63 TDILKSYDYRRTRLLSKMRGQGSTTNAMIKNAAESFSNGEVEIAEDNANYQFTVKFIGAK 122 Query: 149 GIPENMAGLIQIIEEIKPAHLDYKFVYSYTWWNSL--KSLTWNAAHAR--TWNELRV 201 GIP N+ L +EEIKPAHL + ++Y W L K+ TW+ A+ TWNEL V Sbjct: 123 GIPPNLDDLKDAVEEIKPAHLKAIYEFTYLVWYELDAKNWTWDQLDAQDLTWNELEV 179 >ref|NP_389156.1| PBSX prophage [Bacillus subtilis] sp|P54340|XKDU_BACSU Phage-like element PBSX protein xkdU pir||D69733 PBSX prophage ORF xkdU - Bacillus subtilis emb|CAA94042.1| xkdU [Bacillus subtilis] emb|CAB13131.1| xkdU [Bacillus subtilis subsp. subtilis str. 168] Length = 192 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 7/181 (3%) Query: 25 FSKPDLMK-YLPEYYQGVLEMEQIQDSHAAECGQLAYSIEDSALQTNVESATWGLARWEK 83 SK D M+ YLP + + EM ++ + A E + SI D Q V +ATWGL+RWEK Sbjct: 1 MSKQDDMRAYLPPFLTSLKEMAELLKAEAPEFDKQNDSIFDLTDQLFVPTATWGLSRWEK 60 Query: 84 VLALTTDNTKSYAARREMIKAKLRGSGTTTPEMIRRTASAF-SGGDVQVVEVPGAYSFEV 142 +L + ++ + RR + +K+ T I + + F QV +PG Y F V Sbjct: 61 ILNVPRESGDTDEIRRLRLISKMSNIPPITYRAIEQAVNRFLKNPSAQVRLLPGEYRFNV 120 Query: 143 RF-VGTLGIPENMAGLIQIIEEIKPAHLDYKFVYSYTWWNSLK-SLTWNAAHARTWNELR 200 V L ++M LI+ IE +KPAHL Y +K ++ N RT +EL+ Sbjct: 121 DINVDDL---QHMNELIEAIENMKPAHLAYTLRGGLNETLRIKDTVILNHRRYRTASELK 177 Query: 201 V 201 V Sbjct: 178 V 178 >ref|ZP_00145242.1| Phage-like element PBSX protein xkdT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23160.1| Phage-like element PBSX protein xkdT [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 157 Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 54/106 (50%) Query: 94 SYAARREMIKAKLRGSGTTTPEMIRRTASAFSGGDVQVVEVPGAYSFEVRFVGTLGIPEN 153 S R++ I L TP +++ A F+ G+++V+E G YSF ++F +GIP+N Sbjct: 10 SLQDRKDRIIYTLLSKNIFTPHVLKEQAKIFTNGEIEVIEDYGNYSFTIKFTSVVGIPQN 69 Query: 154 MAGLIQIIEEIKPAHLDYKFVYSYTWWNSLKSLTWNAAHARTWNEL 199 + I KPAHL++ + Y N + L N+ A+ E+ Sbjct: 70 LDNFKNFIHINKPAHLNFSIEFRYNTHNQVAYLLHNSLKAKKHKEI 115 >ref|NP_390474.1| similar to phage-related protein [Bacillus subtilis] sp|P45936|YQCA_BACSU Hypothetical protein yqcA pir||H69948 phage-related protein homolog yqcA - Bacillus subtilis dbj|BAA06953.1| ORF123 [Bacillus subtilis] dbj|BAA12417.1| YqcA [Bacillus subtilis] emb|CAB14538.1| yqcA [Bacillus subtilis subsp. subtilis str. 168] Length = 192 Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 5/180 (2%) Query: 25 FSKPDLMK-YLPEYYQGVLEMEQIQDSHAAECGQLAYSIEDSALQTNVESATWGLARWEK 83 SK D M YLP + + EM ++ + A E + SI D Q V +ATWGL RWEK Sbjct: 1 MSKLDEMTAYLPPFLTKLKEMAELLKAEAPEFEKQNNSIFDLTDQLFVTTATWGLERWEK 60 Query: 84 VLALTTDNTKSYAARREMIKAKLRGSGTTTPEMIRRTASAF-SGGDVQVVEVPGAYSFEV 142 +L + ++ + RR + +K+ T I + F QV +PG Y F+V Sbjct: 61 ILNVPRESGDTDEIRRLRLISKMSNIPPATYRAIEHALNRFLKNPSAQVRLLPGEYRFKV 120 Query: 143 RFVGTLGIPENMAGLIQIIEEIKPAHLDYKFVYSYTWWNSLK-SLTWNAAHARTWNELRV 201 + ++M+ LI+ +E +KPAHL Y + +K ++ N R +EL+V Sbjct: 121 DI--DIDDMQHMSELIETLENMKPAHLAYTLRAALNEPLQIKDTVILNYRRYRKASELKV 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.129 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 306,170,828 Number of extensions: 11617191 Number of successful extensions: 31645 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 31644 Number of HSP's successfully gapped: 5 Length of query: 203 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 83 Effective length of database: 431,425,698 Effective search space: 35808332934 Effective search space used: 35808332934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 123 (52.0 bits)