BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0017.p
         (340 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_540345.1| RIBONUCLEASE III [Brucella melitensis] >gi|2538...    76   1e-12
ref|NP_697536.1| conserved hypothetical protein [Brucella suis 1...    76   1e-12
ref|NP_918975.1| putative glycoprotein [Burkholderia cepacia pha...    75   2e-12
ref|NP_947258.1| conserved hypothetical protein [Rhodopseudomona...    64   5e-09
ref|NP_862008.1| RB133 [Ruegeria sp. PR1b] >gi|22726358|gb|AAN05...    57   9e-07

>ref|NP_540345.1| RIBONUCLEASE III [Brucella melitensis]
 pir||AF3430 ribonuclease III [imported] - Brucella melitensis (strain 16M)
 gb|AAL52609.1| RIBONUCLEASE III [Brucella melitensis 16M]
          Length = 278

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 184 VKDQNLAVPPASPAEGDRYIIPAAATGVWAGKTSQIAEYQSAAWVYYTPAVGWTAYVDDE 243
           VK  +L   P+SPAEGDRYI+ A A+G WAGK   +A +    W++  PA GW AYV DE
Sbjct: 38  VKSWSLGDAPSSPAEGDRYIVAAQASGAWAGKDGMVASFIDGGWLFVIPATGWLAYVADE 97

Query: 244 QKIYSWNGSAW 254
             +  ++GS W
Sbjct: 98  ALLLVFDGSLW 108


>ref|NP_697536.1| conserved hypothetical protein [Brucella suis 1330]
 gb|AAN29451.1| conserved hypothetical protein [Brucella suis 1330]
          Length = 278

 Score = 75.9 bits (185), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%)

Query: 184 VKDQNLAVPPASPAEGDRYIIPAAATGVWAGKTSQIAEYQSAAWVYYTPAVGWTAYVDDE 243
           VK  +L   P+SPAEGDRYI+ A A+G WAGK   +A +    W++  PA GW AYV DE
Sbjct: 38  VKSWSLGDAPSSPAEGDRYIVAAQASGAWAGKDGMVASFIDGGWLFVIPATGWLAYVADE 97

Query: 244 QKIYSWNGSAW 254
             +  ++GS W
Sbjct: 98  ALLLVFDGSLW 108


>ref|NP_918975.1| putative glycoprotein [Burkholderia cepacia phage BcepNazgul]
 gb|AAQ63342.1| putative glycoprotein [Burkholderia cepacia phage BcepNazgul]
          Length = 1270

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 46/76 (60%), Gaps = 3/76 (3%)

Query: 181 QSSVKDQNLAVPPASPAEGDRYII--PAAATGVWAGKTSQIAEYQSAAWVYYTPAVGWTA 238
           Q  V D  L VPP+SPAEGDRYI+    A TG WA     +A +   AW +YTP +GWTA
Sbjct: 39  QLGVIDNTLTVPPSSPAEGDRYIVGKSPAPTGAWANHGDDVAAFLGGAWAFYTPKLGWTA 98

Query: 239 YVDDEQKIYSWNGSAW 254
           +     ++  WNG+AW
Sbjct: 99  FSGSTGRV-EWNGTAW 113


>ref|NP_947258.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 emb|CAE27354.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
          Length = 455

 Score = 63.9 bits (154), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 51/84 (60%)

Query: 181 QSSVKDQNLAVPPASPAEGDRYIIPAAATGVWAGKTSQIAEYQSAAWVYYTPAVGWTAYV 240
           Q +V    L+ PP++PAEG R+I+ A+A+G WAGK+ Q+A Y    W ++ P  GW AY 
Sbjct: 34  QLAVLSSALSAPPSAPAEGQRWIVAASASGAWAGKSGQVAAYYDGDWRFFAPNPGWLAYD 93

Query: 241 DDEQKIYSWNGSAWVRTGGALQTI 264
              Q + +W+G+ WV    A Q +
Sbjct: 94  LSTQTLLAWSGAVWVNALAAFQNL 117


>ref|NP_862008.1| RB133 [Ruegeria sp. PR1b]
 gb|AAN05154.1| RB133 [Ruegeria sp. PR1b]
          Length = 466

 Score = 56.6 bits (135), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%)

Query: 181 QSSVKDQNLAVPPASPAEGDRYIIPAAATGVWAGKTSQIAEYQSAAWVYYTPAVGWTAYV 240
           Q  V++     PPASP  G  Y + A  +G+WAG+  QIA +Q   W++     GW A+ 
Sbjct: 107 QLVVQEVGAETPPASPDPGVAYALGANPSGLWAGQGDQIAIFQGEGWLFLPLQPGWRAWD 166

Query: 241 DDEQKIYSWNGSAW 254
              Q +  W+GSAW
Sbjct: 167 LATQSLQVWDGSAW 180


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.129    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 522,041,710
Number of extensions: 22810810
Number of successful extensions: 61882
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 61886
Number of HSP's successfully gapped: 8
Length of query: 340
Length of database: 757,237,578
Length adjustment: 126
Effective length of query: 214
Effective length of database: 415,135,104
Effective search space: 88838912256
Effective search space used: 88838912256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)