BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0016.p
         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_782675.1| hypothetical protein CTC02114 [Clostridium teta...   144   9e-34

>ref|NP_782675.1| hypothetical protein CTC02114 [Clostridium tetani E88]
 gb|AAO36612.1| hypothetical protein [Clostridium tetani E88]
          Length = 416

 Score =  144 bits (362), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 7   IDEFTDKLNKKANGGSYVVEEKLFLTDGVYSGLLAHDNINNQSIAVYTGSRYSGVELRNF 66
           ID+FT+KLNK  +G +YV+EE++ L DGVY G L HDNI+N S+ VYTG + +G ++ NF
Sbjct: 4   IDKFTEKLNK-IDGNTYVIEEEVELKDGVYEGELQHDNISNTSVRVYTGPKLTGNKIENF 62

Query: 67  SVSFPDETPWRRMIKIFAEVPEVYVTYETPGDTVEADDINVLQWGLTAAQRELERYKATG 126
            +S P  TPW++ IKIFA+V + Y+TYETPGDTVEADDIN +Q  +   Q E+E+YKA+ 
Sbjct: 63  ILSTPSLTPWKKEIKIFAKVDKCYITYETPGDTVEADDINKVQESIVNTQIEVEKYKASN 122

Query: 127 RIDGGSFR 134
            ++  + +
Sbjct: 123 NLEICNLK 130


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 220,432,267
Number of extensions: 8962717
Number of successful extensions: 18480
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 18479
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 757,237,578
Length adjustment: 99
Effective length of query: 38
Effective length of database: 488,442,777
Effective search space: 18560825526
Effective search space used: 18560825526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)