BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0015.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099266.1| COG3299: Uncharacterized homolog of phage Mu ... 276 7e-73 ref|NP_390475.1| similar to phage-related protein [Bacillus subt... 253 4e-66 ref|NP_389155.1| PBSX prophage [Bacillus subtilis] >gi|1722877|s... 253 5e-66 ref|ZP_00061154.1| COG3299: Uncharacterized homolog of phage Mu ... 205 2e-51 ref|NP_470623.1| similar to a B. subtilis PBSX prophage protein ... 198 2e-49 >ref|ZP_00099266.1| COG3299: Uncharacterized homolog of phage Mu protein gp47 [Desulfitobacterium hafniense] Length = 359 Score = 276 bits (705), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 153/359 (42%), Positives = 214/359 (59%), Gaps = 11/359 (3%) Query: 3 VYEDQTFEALLGRMLDRVPSSLDKREGSIIYDXXXXXXXXXXQMYIELDVNSNLFFADTA 62 +YE QT+EA+L RML RVP ++DKREGS+IYD Q Y EL VN+NL FADTA Sbjct: 1 MYEHQTYEAILVRMLARVPETIDKREGSLIYDALAPGAAELAQAYAELVVNNNLSFADTA 60 Query: 63 TGEYLERSIAWSGITRRAASKAELKAMFYNSASGLLDVPLGSRFSLDLLHYTAVEKLAPG 122 +GE+L R A GI R+ A+KA + F +S + LL++PLGSR+S+ L+YTA+E+++ G Sbjct: 61 SGEFLTRRAAEFGIKRKVATKAWRRGGFLDSNNALLNIPLGSRYSIGGLNYTAIEQISTG 120 Query: 123 TYRLESETAGEEGNRYFGSLLPIDYIPVLARGEITALLIPGENAEDDEALRQRYLESVRR 182 Y LE ETAG GN+ FG LLPI Y+ LAR E+T +L+PGE+ E DEAL RY E+V Sbjct: 121 AYVLECETAGTAGNQQFGDLLPIAYVNSLARAELTEVLVPGEDEETDEALLSRYYETVNE 180 Query: 183 PSTSGNKYHYMEWALQIDGVGGARVFPLWNGPKTVKVVIVDAAKRPASELLVSQVQQYID 242 P+ GN Y + I+GVGG +VFP W G TVK I+ + S LV++VQ +D Sbjct: 181 PAFGGNMADYRQKVNAINGVGGTKVFPTWAGGGTVKCTIIASDWAKPSPELVNEVQSTMD 240 Query: 243 PVSGQGE--GQXXXXXXXXXXXXXGKSISVSAKVTLASGYS-------LQEVIDAFKEIL 293 P QG GQ ++ V +TLA G + ++ ++DA+ +L Sbjct: 241 PEENQGMGLGQAPIGHAVTIAGVDKVTVDVETTLTLAPGVTPGQVQSDVEAILDAY--LL 298 Query: 294 EKYRKEKAFTASYISQSVIGSLLLDTEGVVDYSGLKLNGVTGNVTLSETEVPLFSSVVL 352 E+ + A T I + I + +L +GV D +G KLNG N L E E+P+ +V++ Sbjct: 299 EQRKTWAAQTQIIIRMAQIDARMLTVQGVEDVTGTKLNGTEANFLLDEEEIPILGTVII 357 >ref|NP_390475.1| similar to phage-related protein [Bacillus subtilis] sp|P45935|YQBT_BACSU Hypothetical protein yqbT pir||G69948 phage-related protein homolog yqbT - Bacillus subtilis dbj|BAA06952.1| ORF89 [Bacillus subtilis] dbj|BAA12416.1| YqbT [Bacillus subtilis] emb|CAB14539.1| yqbT [Bacillus subtilis subsp. subtilis str. 168] Length = 348 Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 140/350 (40%), Positives = 204/350 (58%), Gaps = 11/350 (3%) Query: 3 VYEDQTFEALLGRMLDRVPSSLDKREGSIIYDXXXXXXXXXXQMYIELDVNSNLFFADTA 62 ++EDQT+E+++ RML+ + + +DKREGS+IY+ + YI LD L F+DTA Sbjct: 1 MFEDQTYESIMDRMLNSISADIDKREGSVIYNALAPVAAELAKSYIWLDTVLELVFSDTA 60 Query: 63 TGEYLERSIAWSGITRRAASKAELKAMFYNSASGLLDVPLGSRFSLDLLHYTAVEKLAPG 122 GE+L+R +GI R AA+KA F + +P+GSRF +D L++ + A G Sbjct: 61 QGEFLDRRATEAGIERTAATKAVRAGEFTEGVT----IPVGSRFYVDNLYF---QYTADG 113 Query: 123 TYRLESETAGEEGNRYFG--SLLPIDYIPVLARGEITALLIPGENAEDDEALRQRYLESV 180 T LE ETAGE GN +LL +D IP L + + +LIPG EDD++LR RY V Sbjct: 114 T--LECETAGEAGNANISGQNLLSLDTIPGLQKAIVKEILIPGREEEDDDSLRARYFTRV 171 Query: 181 RRPSTSGNKYHYMEWALQIDGVGGARVFPLWNGPKTVKVVIVDAAKRPASELLVSQVQQY 240 RR + S NK HY +WA ++DGVG +VFPLWNG TVK+V+ +A PAS++L+S+V+ Y Sbjct: 172 RREAVSANKAHYKQWAEEVDGVGKVKVFPLWNGDGTVKIVVTNANLEPASDILISKVKNY 231 Query: 241 IDPVSGQGEGQXXXXXXXXXXXXXGKSISVSAKVTLASGYSLQEVIDAFKEILEKYRKEK 300 IDP GQGEGQ K + +SA+V S+ +V + + K+ Sbjct: 232 IDPEPGQGEGQAPIGAFVTVESAVWKEVEISAEVLPEVNSSIDQVKQEIESGVLNLFKKI 291 Query: 301 AFTASYISQSVIGSLLLDTEGVVDYSGLKLNGVTGNVTLSETEVPLFSSV 350 AF + I S I +++ ++ V DY+ +K+NGV N+ LS E+P V Sbjct: 292 AFEDNVIRLSQINNIVYNSPSVSDYADIKINGVAENLVLSAVEIPKLGQV 341 >ref|NP_389155.1| PBSX prophage [Bacillus subtilis] sp|P54339|XKDT_BACSU Phage-like element PBSX protein xkdT pir||C69733 PBSX prophage ORF xkdT - Bacillus subtilis emb|CAA94041.1| xkdT [Bacillus subtilis] emb|CAB13130.1| xkdT [Bacillus subtilis subsp. subtilis str. 168] Length = 348 Score = 253 bits (646), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/350 (40%), Positives = 205/350 (58%), Gaps = 11/350 (3%) Query: 3 VYEDQTFEALLGRMLDRVPSSLDKREGSIIYDXXXXXXXXXXQMYIELDVNSNLFFADTA 62 ++EDQTFEA++ RML+ + + +D REGS+IY+ + YI LD L F+DTA Sbjct: 1 MFEDQTFEAIMERMLNSISADIDTREGSVIYNALAPAAAELAKSYIWLDTVLELVFSDTA 60 Query: 63 TGEYLERSIAWSGITRRAASKAELKAMFYNSASGLLDVPLGSRFSLDLLHYTAVEKLAPG 122 GE+L+R A +GI R AA+KA F + + +P+GSRF +D L++ + A G Sbjct: 61 QGEFLDRRAAEAGIERTAATKAVRAGEFTSGVT----IPVGSRFYVDNLYF---QYTADG 113 Query: 123 TYRLESETAGEEGNRYFG--SLLPIDYIPVLARGEITALLIPGENAEDDEALRQRYLESV 180 T L ET GE GN +LL +D IP L + +LIPG E D++LR+RY V Sbjct: 114 T--LICETPGEAGNANLTGRNLLSLDTIPGLETAIVKEILIPGREEEGDDSLRERYFTRV 171 Query: 181 RRPSTSGNKYHYMEWALQIDGVGGARVFPLWNGPKTVKVVIVDAAKRPASELLVSQVQQY 240 RR + S NK HY EWA ++DGVG A++FPLWNG TVK+V+ +A PAS +L+ +V+ Y Sbjct: 172 RREAVSANKMHYKEWAEEVDGVGKAKIFPLWNGEGTVKIVVTNANLEPASPILIQKVKDY 231 Query: 241 IDPVSGQGEGQXXXXXXXXXXXXXGKSISVSAKVTLASGYSLQEVIDAFKEILEKYRKEK 300 IDP GQGEGQ K + +SA+V +S+ EV +E + + K+ Sbjct: 232 IDPEPGQGEGQAPIGAVVTVESAVWKEVEISAEVLPEINHSIDEVKSEIEEGVLNFFKKM 291 Query: 301 AFTASYISQSVIGSLLLDTEGVVDYSGLKLNGVTGNVTLSETEVPLFSSV 350 AF + I S I +++ ++ V DYS +++NG + N+ LS+ E+P V Sbjct: 292 AFEDNVIRLSQINNIVYNSPSVSDYSNIQINGTSENLVLSDVEIPKLGQV 341 >ref|ZP_00061154.1| COG3299: Uncharacterized homolog of phage Mu protein gp47 [Clostridium thermocellum ATCC 27405] Length = 352 Score = 205 bits (521), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 187/356 (52%), Gaps = 13/356 (3%) Query: 3 VYEDQTFEALLGRMLDRVPSSLDKREGSIIYDXXXXXXXXXXQMYIELDVNSNLFFADTA 62 ++ED+T+E +L ML RV + +DKREGSIIYD + Y +L+ +LFFADTA Sbjct: 1 MFEDKTYENILNDMLSRVSNDVDKREGSIIYDALAPIAYKLAETYFQLNNYVDLFFADTA 60 Query: 63 TGEYLERSIAWSGITRRAASKAELKAMFYNSASGLLDVPLGSRFSLDLLHYTAVEKLAPG 122 GE+LER A SG+ RR A+KA K + V +G+R+ L+ Y +EK++ Sbjct: 61 VGEFLERRTAESGVERRPATKAIRKIVTTRP------VDVGTRWGLEDTTYVIIEKISDT 114 Query: 123 TYRLESETAGEEGNRYFGSLLPIDYIPVLARGEITALLIPGENAEDDEALRQRYLESVRR 182 YR E E G GN Y G+L ID I ++ E+T +LI GE+ E DE L QRYLE + Sbjct: 115 EYRAECEQYGTIGNLYSGALDNIDNISDVS-AELTDVLILGEDEETDEELYQRYLEEINA 173 Query: 183 PSTSGNKYHYMEWALQIDGVGGARVFPLWNGPKTVKVVIVDAAKRPASELLVSQVQQYID 242 GN Y EW I GVG ++ PLWNG TV+ +I DA + S+ L+ VQ +D Sbjct: 174 IRYGGNVDQYREWISAIPGVGRFKIQPLWNGRGTVRAIITDANNQVPSQELIDLVQNTLD 233 Query: 243 PV-SGQGEGQXXXXXXXXXXXXXGKSISVSAKVTLASGYSLQEVIDAFKEILEKYRKE-- 299 P G G G K ++V+ V GY ++ + I+ +Y E Sbjct: 234 PYQDGMGTGLVPIGHVFTAMGAIPKVVNVTMTVVFEEGYGPADIQQDAERIITEYFSEIN 293 Query: 300 ---KAFTASYISQSVIGSLLLDTEGVVDYSGLKLNGVTGNVTLSETEVPLFSSVVL 352 + F + + +V+ S L++ V D L LNG+ GN+TL+ EV +V + Sbjct: 294 FEDQKFVPTTVRHAVLLSRLINIPMVRDILVLTLNGIDGNITLAPDEVASLGTVTI 349 >ref|NP_470623.1| similar to a B. subtilis PBSX prophage protein [Listeria innocua] pir||AF1593 B. subtilis PBSX prophage protein homolog lin1287 [imported] - Listeria innocua (strain Clip11262) emb|CAC96518.1| lin1287 [Listeria innocua] Length = 361 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 6/357 (1%) Query: 4 YEDQTFEALLGRMLDRVPSSLDKREGSIIYDXXXXXXXXXXQMYIELDVNSNLFFADTAT 63 +E+ TFE ++ MLD VP++LDKREGS+I++ +Y L+ L F DTA Sbjct: 4 FEEMTFENIMESMLDAVPATLDKREGSMIWNSLAPAASQIALLYTWLENAFELVFYDTAP 63 Query: 64 GEYLERSIAWSGITRRAASKAELKAMFYNSASGLLDVPLGSRFSLDLLH-YTAVEKLAPG 122 E+L+R+ A G+ R+ A + + +++P GSRF ++ + Y V Sbjct: 64 DEFLDRAAAPYGVIRKPAVATQRIIKGIDENDNKIEIPEGSRFFVESENIYFKVTSSTIL 123 Query: 123 TYRLESETAGEEGNRYFG--SLLPIDYIPVLARGEITALLIPGENAEDDEALRQRYLESV 180 +E E AG +GN F ++L +D I LA+ EI +LIPG + E+ E R+R+ + Sbjct: 124 EQVVECEVAGTKGNADFSNDTILSLDNIYGLAKVEIGDILIPGSDEEELETFRKRFFTKI 183 Query: 181 RRPSTSGNKYHYMEWALQIDGVGGARVFPLWNGPKTVKVVIVDAAKRPASELLVSQVQQY 240 ++ + SGNK HY WA ++ GVG A+++PL G TVK+VI D PAS LV QV+ Y Sbjct: 184 QKDAFSGNKNHYKLWAEEVLGVGKAKIYPLGYGEGTVKIVITDTNLHPASPTLVEQVRNY 243 Query: 241 IDPVSGQGEGQXXXXXXXXXXXXXGKSISVSAKVTLASGYSLQEVIDAFKEILEKYRKEK 300 IDP+ +GEG K+I++S ++ L G S+ +VI+ + K K Sbjct: 244 IDPLPQKGEGVAPIGAKVFIESAAWKTINISGQLVLKDGKSVNDVIEEITMDINKLFKSI 303 Query: 301 AFTASYISQ---SVIGSLLLDTEGVVDYSGLKLNGVTGNVTLSETEVPLFSSVVLEV 354 F ++ +VI +++ V+D +KLN N+ L+E EVP + E+ Sbjct: 304 TFPEDELTSVKLAVISNIIFSAPSVLDNFNIKLNNEAANIILAENEVPQLGAFSFEL 360 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.134 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 464,955,740 Number of extensions: 17709750 Number of successful extensions: 32218 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 32200 Number of HSP's successfully gapped: 18 Length of query: 354 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 227 Effective length of database: 412,420,005 Effective search space: 93619341135 Effective search space used: 93619341135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)