BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0081.0013.p
         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00099268.1| hypothetical protein [Desulfitobacterium hafn...    65   5e-10
ref|NP_945298.1| hypothetical protein EJ-1p59 [Bacteriophage EJ-...    52   3e-06

>ref|ZP_00099268.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 119

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 18/91 (19%)

Query: 5   YGTVTVAAPLQIQVDQRFILSGAALVLPESVMESKLEW--------DG----------RE 46
           +G +    PL ++VDQRFIL    L++PE + + +++         DG          + 
Sbjct: 26  FGEILTVHPLSVKVDQRFILPADFLMVPERMTKYEVDLQHTHQYTDDGSTSDTSEALTQR 85

Query: 47  IVLRRGLEKGDRVLMVRMQGGQSYVVLDRLV 77
           IV+R GL  GDRVLM+R+QGGQ YV+LD++V
Sbjct: 86  IVIRSGLAPGDRVLMLRVQGGQRYVILDKVV 116


>ref|NP_945298.1| hypothetical protein EJ-1p59 [Bacteriophage EJ-1]
 emb|CAE82141.1| hypothetical protein [Bacteriophage EJ-1]
          Length = 100

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 5  YGTVTVAAPLQIQVDQRFILSGAALVLPESVME---SKLEWDGREIVLRRGLEKGDRVLM 61
          +G+VT  +PL I+V+ +  +  + LVL   V E      E D +  ++ R LE GD+VLM
Sbjct: 25 FGSVTSVSPLTIKVNNKLEIPESFLVLSPMVKELRTGDTEGDNKRWIVFRDLEAGDKVLM 84

Query: 62 VRMQGGQSYVVLDRL 76
          ++ Q GQ Y VL R+
Sbjct: 85 IKAQNGQLYYVLQRM 99


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.140    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 102,683,139
Number of extensions: 3122388
Number of successful extensions: 7261
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7259
Number of HSP's successfully gapped: 2
Length of query: 80
Length of database: 757,237,578
Length adjustment: 50
Effective length of query: 30
Effective length of database: 621,482,628
Effective search space: 18644478840
Effective search space used: 18644478840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)