BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0011.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00099270.1| COG1652: Uncharacterized protein containing L... 190 3e-47 ref|NP_390479.1| similar to phage-related protein [Bacillus subt... 101 1e-20 ref|NP_945296.1| hypothetical protein EJ-1p57 [Bacteriophage EJ-... 92 9e-18 ref|NP_389151.1| PBSX prophage [Bacillus subtilis] >gi|1722873|s... 89 5e-17 ref|NP_470619.1| similar to a B. subtilis PBSX prophage protein ... 86 9e-16 >ref|ZP_00099270.1| COG1652: Uncharacterized protein containing LysM domain [Desulfitobacterium hafniense] Length = 226 Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 106/239 (44%), Positives = 146/239 (61%), Gaps = 27/239 (11%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y LSFN ++ F LPV P +L+ +SG++K+Y I+ LGEIN I P+ E SIFP Sbjct: 6 YSIELSFNNRDESFELPVMPGSLDASKSGNNKTYDIIALGEINIIKNPQRIEYGFSSIFP 65 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 AQ YPFV V++ LL+P EYV++I +WM+S++PIRF+ + + Sbjct: 66 AQRYPFVTVQT-----LLQPIEYVQLIIRWMESKQPIRFIFTS-------------DRFE 107 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKI---------VKGQVKAEPK 174 +N SIESF W+ AG SGD+EYSL LK YV Y A V I P Sbjct: 108 INTLASIESFDWEEVAGGSGDLEYSLKLKSYVPYAAQKVPIEDLIDKSASTVAVPPPAPV 167 Query: 175 RASDKAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLNGIKDSELKKLPIGKVLKLP 233 R ++ PKTYT+ AGD+LW++A+K LG+G ++ IQKLN I D+E+++L IG+VLKLP Sbjct: 168 RPNETKPPKTYTLVAGDTLWAVAQKHLGNGARWPEIQKLNDITDAEIRRLQIGRVLKLP 226 >ref|NP_390479.1| similar to phage-related protein [Bacillus subtilis] sp|P45932|YQBP_BACSU Hypothetical protein yqbP pir||C69948 phage-related protein homolog yqbP - Bacillus subtilis dbj|BAA06948.1| ORF85 [Bacillus subtilis] dbj|BAA12412.1| YqbP [Bacillus subtilis] emb|CAB14543.1| yqbP [Bacillus subtilis subsp. subtilis str. 168] Length = 219 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 26/211 (12%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y F++S + +D RLPV PE ++I + ++S + GEI I P EI+ S FP Sbjct: 6 YEFWIS--QGKDKLRLPVLPEQIDISNTIQNESVKVASFGEITFIDKPGAKEISFSSFFP 63 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 +H P + P + I+KW+KS++P++F+++G + Sbjct: 64 KKHSPLAEYKG-----FPSPENAIAKIEKWVKSKKPVQFLITGTKI-------------- 104 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPKRASDKAVPK 183 N+ SIE F++ GD +Y + LK+Y ASP KI + + + + K+ PK Sbjct: 105 -NLTCSIEVFSYTEGQKDIGDRDYEIKLKEY--KTASPRKIKQKKKTKK--KRPSKSAPK 159 Query: 184 TYTMKAGDSLWSIAKKILGDGQKYKVIQKLN 214 TYT+K GD+LW +A K GD K++ I K+N Sbjct: 160 TYTVKKGDTLWDLAGKFYGDSTKWRKIWKVN 190 >ref|NP_945296.1| hypothetical protein EJ-1p57 [Bacteriophage EJ-1] emb|CAE82139.1| hypothetical protein [Bacteriophage EJ-1] Length = 230 Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 106/204 (51%), Gaps = 27/204 (13%) Query: 5 GFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFPA 64 G F+ + + +LPVNPE L+ K S +++S T + LGEI +++PKL+E+T S FP Sbjct: 4 GIFVEYKG--QVTQLPVNPEELKTKNSANNESATSIALGEITQMSFPKLSEVTFTSFFPR 61 Query: 65 QHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLAL 124 + RS N+ P YV +++K M + P R ++SGV + Sbjct: 62 DTF-----RSYVLNKSGTPETYVRLLKKIMDGKEPCRLIISGV---------------GI 101 Query: 125 NMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPKRASDKAVPKT 184 NM ++ESF + AG DV Y ++ K+Y +A VKI + +V +E K+AS P+ Sbjct: 102 NMLATVESFEQQRKAGIHEDVYYDITFKEYKMAKARFVKI-ENKV-SEEKKASQ---PQK 156 Query: 185 YTMKAGDSLWSIAKKILGDGQKYK 208 + +I K+L +GQ ++ Sbjct: 157 EQAPSTKKEVTIGAKVLVNGQLHR 180 >ref|NP_389151.1| PBSX prophage [Bacillus subtilis] sp|P54335|XKDP_BACSU Phage-like element PBSX protein xkdP pir||G69732 PBSX prophage ORF xkdP - Bacillus subtilis emb|CAA94038.1| xkdP [Bacillus subtilis] emb|CAB13126.1| xkdP [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 26/211 (12%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y F++S + +D RLPV P+ L I + +++ + G++ I EI+ S FP Sbjct: 22 YEFWIS--QGKDKLRLPVLPDQLSISNTVQNETVKVAKFGDLTFIDEQGAKEISFSSFFP 79 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 ++ P ++ P + I+KWMK+++P++F+++G + Sbjct: 80 KKYSPIAEYQN-----FPSPENAITKIEKWMKAKKPVQFLITGTKV-------------- 120 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKYVFYQASPVKIVKGQVKAEPKRASDKAVPK 183 N+ SIE F++ GD + + LK+Y ASP + +K + K + KR S KA PK Sbjct: 121 -NLTCSIEGFSYSEGQQDIGDRSFDIQLKEY--KTASP-RKIKQKKKTKAKRPS-KAAPK 175 Query: 184 TYTMKAGDSLWSIAKKILGDGQKYKVIQKLN 214 TYT+K GD+LW IA + G+ +++ I N Sbjct: 176 TYTVKKGDTLWDIAGRFYGNSTQWRKIWNAN 206 >ref|NP_470619.1| similar to a B. subtilis PBSX prophage protein [Listeria innocua] pir||AB1593 B. subtilis PBSX prophage protein homolog lin1283 [imported] - Listeria innocua (strain Clip11262) emb|CAC96514.1| lin1283 [Listeria innocua] Length = 227 Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 28/216 (12%) Query: 4 YGFFLSFNELEDLFRLPVNPETLEIKESGDSKSYTIVDLGEINAIAYPKLTEITIESIFP 63 Y F++ N+ + RLPV PE LE+ +G + ++ I LGE+ I P + FP Sbjct: 7 YQFWI--NQGKTKTRLPVLPEKLEVSINGKNDNFDIASLGEVTIIQKPGAKTFAFSAFFP 64 Query: 64 AQHYPFVLVRSEGPNRLLRPFEYVEMIQKWMKSRRPIRFVLSGVNLKGEQDHSAVPNDLA 123 P+ + L +Y++ I+ WM + PI+F+++G Sbjct: 65 KNFGPYCEFKPA-----LNAKQYIDRIENWMSNMTPIQFIVTGA---------------G 104 Query: 124 LNMAMSIESFTWKLSAGTSGDVEYSLSLKKY-----VFYQASPVKIVKGQVKAEPKRASD 178 +N SIESF + AG GD + ++LK Y Q ++ K + A+ + + Sbjct: 105 INFTCSIESFNYYEKAGEVGDWYFDITLKIYKKVTIKKIQIKKKQVAKSRPVAKSRPVAK 164 Query: 179 KAVPKTYTMKAGDSLWSIAKKILGDGQKYKVIQKLN 214 K V KTY ++ GD+LW ++KK G ++ I N Sbjct: 165 KKV-KTYIVRQGDTLWDLSKKFYGRNADWRKIWNKN 199 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 346,060,254 Number of extensions: 13580276 Number of successful extensions: 46773 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 46767 Number of HSP's successfully gapped: 9 Length of query: 233 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 111 Effective length of database: 425,995,500 Effective search space: 47285500500 Effective search space used: 47285500500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 124 (52.4 bits)