BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0081.0001.p (140 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_657658.1| hypothetical protein predicted by GeneMark [Bac... 92 4e-18 dbj|BAC57551.1| immunity region protein [Clostridium sordellii] 87 9e-17 ref|NP_244417.1| BH3550~unknown conserved protein [Bacillus halo... 87 1e-16 ref|NP_690786.1| ORF2 [Bacteriophage phi-105] >gi|4126639|dbj|BA... 85 4e-16 sp|P10426|YIM2_BPPH1 HYPOTHETICAL IMMUNITY REGION PROTEIN 2 >gi|... 85 5e-16 >ref|NP_657658.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_846082.1| prophage LambdaBa01, repressor protein, putative [Bacillus anthracis str. Ames] gb|AAP27568.1| prophage LambdaBa01, repressor protein, putative [Bacillus anthracis str. Ames] Length = 142 Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 76/134 (56%), Gaps = 4/134 (2%) Query: 6 EIINKLIKKYKTNSPFELSKALGIHIRFMNLGQSTKGLYYRKLRRRFIVIHNELPLEWQR 65 +++ +L KY T +P+EL+ L I++ +L + G Y + R RFIVI+N L QR Sbjct: 7 DLVQQLCTKYNTTNPYELADYLKINVLTWDLHEEINGFYKYEKRNRFIVINNHLSPSMQR 66 Query: 66 FVCAHELGHDRLHKGINRFFLEENSYFSPGKLERQANLFAIKLLSSGSS--PEQEEPLLR 123 VCAHELGH LH N FL +N++FS KLE +AN FA LL + P + + Sbjct: 67 TVCAHELGHAILHTHANTPFLRKNTFFSVDKLEIEANTFAALLLIDKKTIQPGDTKACIA 126 Query: 124 YYLRIGIPPEVIFF 137 Y + IP E++ F Sbjct: 127 Y--KNDIPVELLEF 138 >dbj|BAC57551.1| immunity region protein [Clostridium sordellii] Length = 152 Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 46/102 (45%), Positives = 65/102 (63%) Query: 8 INKLIKKYKTNSPFELSKALGIHIRFMNLGQSTKGLYYRKLRRRFIVIHNELPLEWQRFV 67 I L+ K KT +PFEL++ALGI + L G Y+ + +FI I+++LP E + V Sbjct: 11 IKGLVNKNKTRNPFELAEALGIILVEAPLKDGLNGCYHERSGFQFIYINSDLPYEKRLMV 70 Query: 68 CAHELGHDRLHKGINRFFLEENSYFSPGKLERQANLFAIKLL 109 AHELGH LH+G N +L N+Y++ G ER+ANLFA +LL Sbjct: 71 AAHELGHAILHRGRNILYLSNNTYYTRGTFEREANLFAAELL 112 >ref|NP_244417.1| BH3550~unknown conserved protein [Bacillus halodurans] pir||F84093 hypothetical protein BH3550 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07269.1| BH3550~unknown conserved protein [Bacillus halodurans] Length = 146 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 13/143 (9%) Query: 1 VKNMDEIINKLIKKYKTNSPFELSKALGIHIRFMNLGQSTKGLYYRKLRRRFIVIHNELP 60 + + +++ K+I+K+ TN+PFE++ GI + F +LG+ G ++ R + I I++EL Sbjct: 2 AEKIKQVVEKMIRKHGTNNPFEIASQKGIVLMFESLGK-IYGYHHTFHRIQIIHINDELN 60 Query: 61 LEWQRFVCAHELGHDRLHKGINRFFLEENSYFSPGKLERQANLFAIKLLSS--------G 112 +RFVCAHELGH LH ++ FL +N+ F K+ER+AN FA++LL S G Sbjct: 61 EPMKRFVCAHELGHAVLHPELSTSFLRKNTLFCMDKIEREANEFAVELLLSDEVLYTYQG 120 Query: 113 SSPEQEEPLLRYYLRIGIPPEVI 135 + E Y GIP EV+ Sbjct: 121 TDATIYEAAAAY----GIPREVV 139 >ref|NP_690786.1| ORF2 [Bacteriophage phi-105] dbj|BAA36659.1| ORF2 [bacteriophage phi-105] Length = 148 Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 65/102 (63%) Query: 8 INKLIKKYKTNSPFELSKALGIHIRFMNLGQSTKGLYYRKLRRRFIVIHNELPLEWQRFV 67 + +LIKKYKT++P+EL+ + I++ NL G Y R ++IVI++ L + FV Sbjct: 6 VQRLIKKYKTSNPYELASYININVIPWNLHHEIMGFYKYDKRNKYIVINSNLNQAERTFV 65 Query: 68 CAHELGHDRLHKGINRFFLEENSYFSPGKLERQANLFAIKLL 109 C+HELGH +LH N F++E + FS K E +AN FA++LL Sbjct: 66 CSHELGHAQLHPRANTPFMKERTLFSVDKYEVEANTFAVELL 107 >sp|P10426|YIM2_BPPH1 HYPOTHETICAL IMMUNITY REGION PROTEIN 2 pir||IMBP2 immunity region protein 2 - Bacillus phage phi-105 emb|CAA26568.1| unnamed protein product [Bacteriophage phi-105] prf||1112178G ORF 2 Length = 158 Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/102 (42%), Positives = 65/102 (63%) Query: 8 INKLIKKYKTNSPFELSKALGIHIRFMNLGQSTKGLYYRKLRRRFIVIHNELPLEWQRFV 67 + +LIKKYKT++P+EL+ + I++ NL G Y R ++IVI++ L + FV Sbjct: 16 VQRLIKKYKTSNPYELASYININVIPWNLHHEIMGFYKYDKRNKYIVINSNLNQAERTFV 75 Query: 68 CAHELGHDRLHKGINRFFLEENSYFSPGKLERQANLFAIKLL 109 C+HELGH +LH N F++E + FS K E +AN FA++LL Sbjct: 76 CSHELGHAQLHPRANTPFMKERTLFSVDKYEVEANTFAVELL 117 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 218,384,449 Number of extensions: 8561556 Number of successful extensions: 17863 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 17858 Number of HSP's successfully gapped: 15 Length of query: 140 Length of database: 757,237,578 Length adjustment: 101 Effective length of query: 39 Effective length of database: 483,012,579 Effective search space: 18837490581 Effective search space used: 18837490581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 120 (50.8 bits)