BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0080.0002.p
         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00183991.1| hypothetical protein Exigu062901 [Exiguobacte...    65   4e-10
ref|NP_464619.1| lmo1094 [Listeria monocytogenes EGD-e] >gi|2538...    64   1e-09
ref|NP_470416.1| lin1079 [Listeria innocua] >gi|25380997|pir||AF...    63   2e-09
ref|NP_630563.1| hypothetical protein SC9C7.16c [Streptomyces co...    59   4e-08
ref|NP_420778.1| conserved hypothetical protein [Caulobacter cre...    57   1e-07

>ref|ZP_00183991.1| hypothetical protein Exigu062901 [Exiguobacterium sp. 255-15]
          Length = 100

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 2/97 (2%)

Query: 1   MYAKFTSKPGDRXXXXXXXXXXXXXXXTVKECELYIVNLSESEPDVLWVTEVWSNAEAHS 60
           ++ KFT++PG+                 V +CE YIV+ +E E D + V E+W++  AH+
Sbjct: 5   LWTKFTTQPGEGHRLVEVLLEAATSLQDVSDCEQYIVSTTE-EADTVMVREIWTDQAAHA 63

Query: 61  ASLKDEATRATIQRAMPLIAGVEP-IPLVPLGGKGLA 96
           ASL+  ATR  I++A P++  VE  +   P GGKGLA
Sbjct: 64  ASLQLPATRQLIEQARPILLKVERLLEDQPHGGKGLA 100


>ref|NP_464619.1| lmo1094 [Listeria monocytogenes EGD-e]
 pir||AF1211 hypothetical protein lmo1094 [imported] - Listeria monocytogenes
           (strain EGD-e)
 emb|CAC99172.1| lmo1094 [Listeria monocytogenes]
          Length = 102

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5   FTSKPGDRXXXXXXXXXXXXXXXTVKECELYIVNLSESEPDVLWVTEVWSNAEAHSASLK 64
           F + PG+R                   C  YIV+ SE+E D ++V+E+W +   H ASL 
Sbjct: 11  FYTHPGERDHLVKILLEAAESLEEYNTCIQYIVSESENEADTVFVSEIWVDKGHHEASLD 70

Query: 65  DEATRATIQRAMPLIAGVEPIP-LVPLGGKGL 95
           + A +ATI+RA PLI  V+ I  L  LGGKG+
Sbjct: 71  NPAVKATIERAKPLIKEVKRIQELDILGGKGV 102


>ref|NP_470416.1| lin1079 [Listeria innocua]
 pir||AF1567 hypothetical protein lin1079 [imported] - Listeria innocua  (strain
           Clip11262)
 emb|CAC96310.1| lin1079 [Listeria innocua]
          Length = 102

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 5   FTSKPGDRXXXXXXXXXXXXXXXTVKECELYIVNLSESEPDVLWVTEVWSNAEAHSASLK 64
           F + PG++                   C  YIV+ SE+EPD ++V+E+W +   H ASL 
Sbjct: 11  FYTHPGEKDNLVKILLEAAEGLDDYNTCIQYIVSESETEPDTVFVSEIWVDKGHHKASLD 70

Query: 65  DEATRATIQRAMPLIAGVEPIP-LVPLGGKGL 95
           + A + TI+RA PLI  ++ I  L  LGGKG+
Sbjct: 71  NPAVQETIKRAKPLIKDIKQIQELDILGGKGI 102


>ref|NP_630563.1| hypothetical protein SC9C7.16c [Streptomyces coelicolor A3(2)]
 pir||T35967 hypothetical protein SC9C7.16c - Streptomyces coelicolor
 emb|CAA22728.1| hypothetical protein SC9C7.16c [Streptomyces coelicolor A3(2)]
          Length = 99

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 33/50 (66%)

Query: 32 CELYIVNLSESEPDVLWVTEVWSNAEAHSASLKDEATRATIQRAMPLIAG 81
          CELY+V LSE +   +WVTEVW   E H ASL+  A +  I RAMP++ G
Sbjct: 35 CELYVVGLSEDDETTIWVTEVWRTREDHDASLELPAAKDAIGRAMPMLTG 84


>ref|NP_420778.1| conserved hypothetical protein [Caulobacter crescentus CB15]
 pir||F87493 conserved hypothetical protein CC1971 [imported] - Caulobacter
           crescentus
 gb|AAK23946.1| conserved hypothetical protein [Caulobacter crescentus CB15]
          Length = 210

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%)

Query: 32  CELYIVNLSESEPDVLWVTEVWSNAEAHSASLKDEATRATIQRAMPLIAGV-EPIPLVPL 90
           C  Y++    + P+ +W+TEVW++  AH+ SLK  A +A I +A P+IAG  +     P+
Sbjct: 144 CLSYVLATDPANPEAIWITEVWTDKAAHAGSLKLPAVQAAIAKARPIIAGFPQRFETTPI 203

Query: 91  GGKGL 95
           GG GL
Sbjct: 204 GGHGL 208


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 130,543,467
Number of extensions: 3750435
Number of successful extensions: 6190
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 6189
Number of HSP's successfully gapped: 7
Length of query: 102
Length of database: 757,237,578
Length adjustment: 69
Effective length of query: 33
Effective length of database: 569,895,747
Effective search space: 18806559651
Effective search space used: 18806559651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)