BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0080.0001.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00039636.1| COG4760: Predicted membrane protein [Xylella ... 221 1e-56 ref|NP_300037.1| conserved hypothetical protein [Xylella fastidi... 220 2e-56 ref|NP_636354.1| conserved hypothetical protein [Xanthomonas cam... 219 3e-56 ref|NP_780272.1| conserved hypothetical protein [Xylella fastidi... 219 5e-56 ref|NP_641394.1| conserved hypothetical protein [Xanthomonas axo... 218 9e-56 >ref|ZP_00039636.1| COG4760: Predicted membrane protein [Xylella fastidiosa Dixon] Length = 253 Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 116/225 (51%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + L + AWS V Y IGGA+ G +LALI +FK Sbjct: 29 MTLNGTVNKTGALLLLALVTSVFAWSQSLGVDGVPLLAARGYMIGGAIGGLILALITAFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 +P P+YAL EG FLGA+SA YE + GI QA LLT +A+LLAY++ +I+AT Sbjct: 89 KEWSPITAPMYALVEGFFLGAVSAVYEAKFGGIVFQAVLLTFGTLMAMLLAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA++YL+SF L FG+ +P +H DF Sbjct: 149 ENFKLGVMAATGGIALLYLISFGLSFFGIHIPMIHEAGTFGIVFSLFVVVIAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 D IEHG +QGAPKYMEWYGAFGLMVTLVWLY+E LRLLSK++SR+ Sbjct: 209 DLIEHGVEQGAPKYMEWYGAFGLMVTLVWLYLECLRLLSKIQSRD 253 >ref|NP_300037.1| conserved hypothetical protein [Xylella fastidiosa 9a5c] pir||C82517 conserved hypothetical protein XF2760 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF85545.1| conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 253 Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + L + AW+ V Y IGGA+ G +LALI +FK Sbjct: 29 MTLNGTVNKTGALLLLALVTSVFAWNQSLGVDGVPLLAARGYMIGGAIGGLILALITAFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 +P P+YAL EG FLGA+SA YE + GI QA LLT +A+LLAY++ +I+AT Sbjct: 89 KEWSPITAPMYALVEGFFLGAVSAVYEAKFGGIVFQAVLLTFGTLMAMLLAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA++YL+SF L FG+ +P +H DF Sbjct: 149 ENFKLGVMAATGGIALLYLISFALSFFGIHIPMIHEGGTFGIVFSLFVVVIAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 D IEHG +QGAPKYMEWYGAFGLMVTLVWLY+E LRLLSK++SR+ Sbjct: 209 DLIEHGVEQGAPKYMEWYGAFGLMVTLVWLYLECLRLLSKIQSRD 253 >ref|NP_636354.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM40278.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 253 Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/225 (53%), Positives = 145/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYF--NGQDVSA---YAIGGALAGFVLALIISFK 55 M++NGTVNKT + L + + A AWS +G + A Y I GA+ G V AL SFK Sbjct: 29 MTLNGTVNKTGLLLLMAVVTAAFAWSQSVGADGMPLPAAKLYMIAGAIGGLVFALATSFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 PT AP +YAL EG FLG+ISA YE + GI QA LLT ALL AY++ +I+AT Sbjct: 89 PTWAPVTAALYALVEGFFLGSISAVYEARFNGIVFQAVLLTFGTMFALLFAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA+VYL + VLGLFGV +P++H DF Sbjct: 149 ENFKLGVVAATGGIALVYLATIVLGLFGVRIPFIHDSGLIGIGFSLFVVVVAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 DFIE G + GAPK+MEWYGAFGLMVTLVWLY+E LRLLSKL+SRN Sbjct: 209 DFIESGVEHGAPKHMEWYGAFGLMVTLVWLYIEFLRLLSKLQSRN 253 >ref|NP_780272.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gb|AAO29921.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] Length = 253 Score = 219 bits (557), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 115/225 (51%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + L + AW+ V Y IGGA+ G +LALI +FK Sbjct: 29 MTLNGTVNKTGALLLLALVTSVFAWNQSLGVDGVPLLAARGYMIGGAIGGLILALITAFK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 +P P+YAL EG FLGA+SA YE + GI QA LLT +A+LLAY++ +I+AT Sbjct: 89 KEWSPITAPMYALLEGFFLGAVSAVYEAKFGGIVFQAVLLTFGTLMAMLLAYRSGLIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA++YL+SF L FG+ +P +H DF Sbjct: 149 ENFKLGVMAATGGIALLYLISFGLSFFGIHIPMIHEGGTFGIVFSLFVVVIAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 D IEHG +QGAPKYMEWYGAFGLMVTLVWLY+E LRLLSK++SR+ Sbjct: 209 DLIEHGVEQGAPKYMEWYGAFGLMVTLVWLYLECLRLLSKIQSRD 253 >ref|NP_641394.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM35930.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 253 Score = 218 bits (555), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 119/225 (52%), Positives = 141/225 (62%), Gaps = 5/225 (2%) Query: 1 MSINGTVNKTFITLTILLAGAFSAWSMYFNGQDV-----SAYAIGGALAGFVLALIISFK 55 M++NGTVNKT L + + A AWS + Y I GA+ G V AL S K Sbjct: 29 MTLNGTVNKTGALLLMAVITAAFAWSQSIGADGMPLPVARIYMIAGAIGGLVFALATSLK 88 Query: 56 PTAAPYLVPVYALAEGLFLGAISASYEGLYYGITLQAALLTLSIFVALLLAYKTRIIRAT 115 PT AP P+YAL EG FLG+ISA YE + GI QA LLT ALL AY++ +I+AT Sbjct: 89 PTWAPITAPLYALIEGFFLGSISAVYEARFNGIVFQAVLLTFGTLFALLFAYRSGMIKAT 148 Query: 116 EKFKLGVFAATAGIAIVYLLSFVLGLFGVTVPYLHSXXXXXXXXXXXXXXXXXXXXXXDF 175 E FKLGV AAT GIA+VYL + VLGLFGV +P++H DF Sbjct: 149 ENFKLGVVAATGGIALVYLATIVLGLFGVRIPFIHDSGLIGIGFSLFVVVVAALNLVLDF 208 Query: 176 DFIEHGAQQGAPKYMEWYGAFGLMVTLVWLYVEILRLLSKLRSRN 220 DFIE G + GAPK+MEWYGAFGLMVTLVWLY+E LRLLSKL+SRN Sbjct: 209 DFIESGVEHGAPKHMEWYGAFGLMVTLVWLYIEFLRLLSKLQSRN 253 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.142 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 265,254,871 Number of extensions: 9016132 Number of successful extensions: 37030 Number of sequences better than 1.0e-05: 139 Number of HSP's gapped: 36825 Number of HSP's successfully gapped: 140 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)