BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0079.0001.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAE45698.1| ATP-binding MalK protein [Alicyclobacillus acido... 194 5e-49 ref|ZP_00061441.1| COG3839: ABC-type sugar transport systems, AT... 185 3e-46 gb|AAC62409.1| maltose transportor ATP-binding protein [Bacillus... 184 6e-46 ref|NP_563261.1| probable maltose ABC transportor [Clostridium p... 182 2e-45 dbj|BAA95937.1| Orf5 [Clostridium perfringens] 182 2e-45 >emb|CAE45698.1| ATP-binding MalK protein [Alicyclobacillus acidocaldarius] Length = 384 Score = 194 bits (494), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/160 (63%), Positives = 118/160 (73%), Gaps = 21/160 (13%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA V LEHI+K YPG + TV D NLDI+DKEF V VGPSGCGK+TTLRMIAGLE+I+EG Sbjct: 1 MARVLLEHIYKTYPGQTEPTVKDFNLDIQDKEFTVFVGPSGCGKTTTLRMIAGLEDITEG 60 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDRVILFFY 120 +YIGDR VNDV PKDRDIAMVFQ+YALYPHM+VYQNMAFGLKLRKV K EIDR Sbjct: 61 NLYIGDRRVNDVPPKDRDIAMVFQNYALYPHMTVYQNMAFGLKLRKVPKAEIDR------ 114 Query: 121 RNYMFIRVKFASQAALTLIVSKAHLVEKCDKIGEKSKSGG 160 RV+ A++ I+ AHL+++ K+ SGG Sbjct: 115 ------RVQEAAK-----ILDIAHLLDR----KPKALSGG 139 >ref|ZP_00061441.1| COG3839: ABC-type sugar transport systems, ATPase components [Clostridium thermocellum ATCC 27405] Length = 213 Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 86/117 (73%), Positives = 105/117 (89%), Gaps = 1/117 (0%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA V+L+ ++K+YPG A V D NLDI+DKEF++LVGPSGCGK+TTLRM+AGLEEI+EG Sbjct: 1 MASVKLKGVYKRYPGGVTA-VNDFNLDIEDKEFIILVGPSGCGKTTTLRMVAGLEEITEG 59 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDRVIL 117 ++YIGD++VNDVAPKDRDIAMVFQ+YALYPHMSV+ NMAFGLKLRKV K+EI R +L Sbjct: 60 ELYIGDKLVNDVAPKDRDIAMVFQNYALYPHMSVFDNMAFGLKLRKVPKDEIKRRVL 116 >gb|AAC62409.1| maltose transportor ATP-binding protein [Bacillus firmus] Length = 366 Score = 184 bits (467), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 88/114 (77%), Positives = 101/114 (88%), Gaps = 1/114 (0%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA ++L++I+K Y G D V D NLDIKDKEF+V VGPSGCGKSTTLRMIAGLE+IS+G Sbjct: 1 MADIQLKNIYKIYDG-DVTAVTDFNLDIKDKEFIVFVGPSGCGKSTTLRMIAGLEDISKG 59 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114 +YIGDR VNDVAPKDRDIAMVFQ+YALYPHM+VY+NMAFGLKLRK KK+EIDR Sbjct: 60 DLYIGDRRVNDVAPKDRDIAMVFQNYALYPHMNVYENMAFGLKLRKFKKDEIDR 113 >ref|NP_563261.1| probable maltose ABC transportor [Clostridium perfringens] dbj|BAB82051.1| probable maltose ABC transportor [Clostridium perfringens str. 13] Length = 369 Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/114 (75%), Positives = 100/114 (87%), Gaps = 1/114 (0%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA + L+HI+K YPG D V D NL+I DKEF+V VGPSGCGKSTTLRMIAGLEEIS+G Sbjct: 1 MANLSLKHIYKVYPG-DVTAVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISKG 59 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114 ++YIGDR+VN+V PK+RDIAMVFQSYALYPHM+VY NMAFGLKLRKV K+EID+ Sbjct: 60 ELYIGDRLVNEVEPKERDIAMVFQSYALYPHMTVYDNMAFGLKLRKVPKDEIDK 113 >dbj|BAA95937.1| Orf5 [Clostridium perfringens] Length = 369 Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 86/114 (75%), Positives = 100/114 (87%), Gaps = 1/114 (0%) Query: 1 MAGVRLEHIFKKYPGSDKATVIDINLDIKDKEFLVLVGPSGCGKSTTLRMIAGLEEISEG 60 MA + L+HI+K YPG D V D NL+I DKEF+V VGPSGCGKSTTLRMIAGLEEIS+G Sbjct: 1 MANLSLKHIYKVYPG-DVTAVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISKG 59 Query: 61 KMYIGDRVVNDVAPKDRDIAMVFQSYALYPHMSVYQNMAFGLKLRKVKKEEIDR 114 ++YIGDR+VN+V PK+RDIAMVFQSYALYPHM+VY NMAFGLKLRKV K+EID+ Sbjct: 60 ELYIGDRLVNEVEPKERDIAMVFQSYALYPHMTVYDNMAFGLKLRKVPKDEIDK 113 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 223,618,043 Number of extensions: 8230214 Number of successful extensions: 66429 Number of sequences better than 1.0e-05: 6391 Number of HSP's gapped: 66173 Number of HSP's successfully gapped: 6398 Length of query: 162 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 46 Effective length of database: 442,286,094 Effective search space: 20345160324 Effective search space used: 20345160324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)