BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0035.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_842884.1| conserved hypothetical protein [Bacillus anthra... 159 5e-38 ref|NP_830208.1| Zinc metalloprotease [Bacillus cereus ATCC 1457... 158 7e-38 ref|NP_976759.1| conserved hypothetical protein [Bacillus cereus... 156 3e-37 ref|NP_654268.1| DUF45, Protein of unknown function DUF45 [Bacil... 131 1e-29 ref|ZP_00060012.1| COG1451: Predicted metal-dependent hydrolase ... 114 1e-24 >ref|NP_842884.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24370.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 235 Score = 159 bits (402), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 18/228 (7%) Query: 11 QTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESXXXXXXXX 70 +T+ H+ Y K+K + L +D G + V+AP G E + +E +WI + Sbjct: 8 ETINFHITYKKKKSVRLFVDSYGNVEVQAPKGTPVEYLIQLLEEKWDWIQTTRKEMAERA 67 Query: 71 XXXXXKEYQGEDKFLYLGKEYLLHELINTS-EQDVX-----------------XXXXXXX 112 K+Y + FLYLG Y + + S EQD Sbjct: 68 RGPQEKDYDQGEGFLYLGNTYPIQISQDASIEQDNAIFEGDKLHIYVKELKDEKIQQALK 127 Query: 113 XFYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEV 172 FY+ K +V I +Q+ K KP+SI I +S WG+C ++ +LTFN++LAMAP V Sbjct: 128 RFYYKQCKSLVGKSIKAHQSNFKTKPRSIRITDSSRTWGTCDSNLQLTFNWKLAMAPQRV 187 Query: 173 IDYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 IDYV++HE+CH++H+NHDRSFWR +G +MPDY+E +LA MT+ Sbjct: 188 IDYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYKEMENWLALSSWKMTV 235 >ref|NP_830208.1| Zinc metalloprotease [Bacillus cereus ATCC 14579] gb|AAP07409.1| Zinc metalloprotease [Bacillus cereus ATCC 14579] Length = 235 Score = 158 bits (400), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 81/228 (35%), Positives = 120/228 (52%), Gaps = 18/228 (7%) Query: 11 QTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESXXXXXXXX 70 +T+ H+ Y K+K + L +D G + V+AP G E + +E +WI + Sbjct: 8 ETINFHITYKKKKSVRLFVDSYGNVEVQAPKGTPVEYLVQLLEEKWDWIQATRKEMQERA 67 Query: 71 XXXXXKEYQGEDKFLYLGKEYLLHELINTS-EQDVX-----------------XXXXXXX 112 K+Y + FLYLG Y + + S EQD Sbjct: 68 LGPQEKDYDQGEGFLYLGSTYPIQISQDASIEQDNAIFEGDKLHIYVKELKDEKIQQALK 127 Query: 113 XFYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEV 172 FY+ K +V I +Q+ K KP+SI I +S WG+C ++ +LTFN++LAMAP V Sbjct: 128 RFYYKQCKSLVEKSIKAHQSNFKTKPRSIRITDSSRTWGTCDSNLQLTFNWKLAMAPQRV 187 Query: 173 IDYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 IDYV++HE+CH++H+NHDRSFWR +G +MPDY+E +LA MT+ Sbjct: 188 IDYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYKEMENWLALSSWKMTV 235 >ref|NP_976759.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39367.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 235 Score = 156 bits (395), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 119/228 (52%), Gaps = 18/228 (7%) Query: 11 QTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWILESXXXXXXXX 70 +T+ H+ Y K+K + +D G + V+AP G E + +E +WI + Sbjct: 8 ETINFHITYKKKKSVRFLVDSYGNVEVQAPKGTPVEYLVQLLEEKWDWIQTTCKEMEERA 67 Query: 71 XXXXXKEYQGEDKFLYLGKEYLLH--ELINTSEQDV----------------XXXXXXXX 112 K+Y + FLYLG Y + + N ++ + Sbjct: 68 RGPQEKDYDQGEGFLYLGNTYPIQISQDTNITQDNAVFEGDKLHIYVKDLKDEKIQQALK 127 Query: 113 XFYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEV 172 FY+ K +V I +Q+ K KP+SI I +S WG+C ++ +LTFN++LAMAP V Sbjct: 128 RFYYKQCKTLVEKSIKAHQSNFKTKPRSIRITDSSRTWGTCDSNLQLTFNWKLAMAPQRV 187 Query: 173 IDYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 IDYV++HE+CH++H+NHDRSFWR +G +MPDY+E +LA MT+ Sbjct: 188 IDYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYKEMENWLALSSWKMTV 235 >ref|NP_654268.1| DUF45, Protein of unknown function DUF45 [Bacillus anthracis A2012] Length = 154 Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 53/107 (49%), Positives = 76/107 (71%) Query: 114 FYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNYRLAMAPMEVI 173 FY+ K +V I +Q+ K KP+SI I +S WG+C ++ +LTFN++LAMAP VI Sbjct: 48 FYYKQCKSLVGKSIKAHQSNFKTKPRSIRITDSSRTWGTCDSNLQLTFNWKLAMAPQRVI 107 Query: 174 DYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQGQFMTL 220 DYV++HE+CH++H+NHDRSFWR +G +MPDY+E +LA MT+ Sbjct: 108 DYVVVHEMCHMVHLNHDRSFWRLVGKIMPDYKEMENWLALSSWKMTV 154 >ref|ZP_00060012.1| COG1451: Predicted metal-dependent hydrolase [Clostridium thermocellum ATCC 27405] Length = 243 Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 22/232 (9%) Query: 6 IQLGDQTLQLHVQYGKQKKISLQIDMVGLIIVKAPTGASEEMIRSAVERHGEWIL-ESXX 64 I G ++ + ++K + ++I G + V AP + ++ + + WIL + Sbjct: 7 ISNGTNSISYTLTRSRRKTVGIRITENGEVKVAAPLNIPDRQLKDIILKKLPWILRKQEE 66 Query: 65 XXXXXXXXXXXKEYQGEDKFLYLGKEY-------LLHELINTSEQDVXXXXXXXX----- 112 ++ + FLYLGKEY +L E +N E + Sbjct: 67 LRKICEESRLENKFADGETFLYLGKEYTLRIAKGVLPEGVNLEENYIVVAADETKVSVNG 126 Query: 113 ---------XFYFASLKKIVAGRIPRYQAVLKVKPKSIEIVESRTKWGSCSADKKLTFNY 163 FY I R+ + + V P+ + + E +T+WGSCS+ ++ N+ Sbjct: 127 PQYIRNVLKNFYVNQFVDIAKTRMDFFSPKIGVCPRKLTVREQKTRWGSCSSKGNISLNW 186 Query: 164 RLAMAPMEVIDYVIIHELCHLLHMNHDRSFWRRLGSVMPDYREKGAFLARQG 215 +L MAPMEVIDYVI+HELCH+ MNH +++W + S++PD+ + +L G Sbjct: 187 KLVMAPMEVIDYVIVHELCHMKEMNHSKNYWNIVKSIIPDFELRRKWLKDNG 238 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 269,707,090 Number of extensions: 8946563 Number of successful extensions: 17609 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 17574 Number of HSP's successfully gapped: 145 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)