BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0078.0030.p
         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_561384.1| hypothetical protein [Clostridium perfringens] ...    65   5e-10
ref|ZP_00014586.1| hypothetical protein [Rhodospirillum rubrum]        61   9e-09
ref|ZP_00016591.1| hypothetical protein [Rhodospirillum rubrum]        55   4e-07

>ref|NP_561384.1| hypothetical protein [Clostridium perfringens]
 dbj|BAB80174.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 95

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 55/92 (59%)

Query: 6  ADVLSLESLLVQREGNIASDMDGEKVMLNVKNGKYYNLGEVGGEIWTALASPVTAGRVVE 65
          + ++SL+S++ Q+EG   ++++GEKVM+++  GKY+ L E G  IW A+  P +   ++E
Sbjct: 3  SKLISLDSIVSQKEGIDVTELNGEKVMMDLDKGKYFMLNETGSTIWDAINEPKSVSEIIE 62

Query: 66 IIRETFEVPEEIARQDVFAFLQSLLDEDLAGI 97
             + +++  E     V  +L+ L  E++  I
Sbjct: 63 ATIKEYDIDRETCESKVLEYLEKLRHEEIVFI 94


>ref|ZP_00014586.1| hypothetical protein [Rhodospirillum rubrum]
          Length = 92

 Score = 60.8 bits (146), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 53/92 (57%)

Query: 8  VLSLESLLVQREGNIASDMDGEKVMLNVKNGKYYNLGEVGGEIWTALASPVTAGRVVEII 67
          +++++++LV+ +  + S++D E VM++V++G Y+ L  +G  IW  L  PV  G +  I+
Sbjct: 1  MVTIDTVLVRTDHCLVSEIDNELVMMDVQSGHYFTLDAIGNNIWNRLEQPVRVGDLCVIL 60

Query: 68 RETFEVPEEIARQDVFAFLQSLLDEDLAGIVS 99
           + +  P ++   DV   L S+  E L  + +
Sbjct: 61 EQAYAAPLDVITADVLRLLDSMAGEGLVKVAA 92


>ref|ZP_00016591.1| hypothetical protein [Rhodospirillum rubrum]
          Length = 105

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 54/94 (57%)

Query: 4   NTADVLSLESLLVQREGNIASDMDGEKVMLNVKNGKYYNLGEVGGEIWTALASPVTAGRV 63
           + A +++L S +  R G +A ++D E VM+++++G+Y+ L  VG E+W  L  P+    +
Sbjct: 10  DFAFMITLASRIAIRPGLMAREIDDEMVMMDIESGQYFTLDGVGTEVWRLLGQPIQVSTL 69

Query: 64  VEIIRETFEVPEEIARQDVFAFLQSLLDEDLAGI 97
            + + E +E        D+  FL+SLL++ L  I
Sbjct: 70  GDRLMELYEGDRTAIDADLLRFLESLLEKRLIEI 103


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.134    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 139,857,561
Number of extensions: 5155989
Number of successful extensions: 11095
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11095
Number of HSP's successfully gapped: 3
Length of query: 101
Length of database: 757,237,578
Length adjustment: 68
Effective length of query: 33
Effective length of database: 572,610,846
Effective search space: 18896157918
Effective search space used: 18896157918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 120 (50.8 bits)