BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0078.0021.p
         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00110429.1| hypothetical protein [Nostoc punctiforme]           60   3e-08

>ref|ZP_00110429.1| hypothetical protein [Nostoc punctiforme]
          Length = 201

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 15/201 (7%)

Query: 5   SATESLIRLFQEYLELSARLRPDYTASLGSGQGEGQPAVSDIVPDAPQLLQAIYSQVSGT 64
              E + R FQ  LE+    RP Y A++  G  +        +   P+ L AIYS V G 
Sbjct: 2   KKREKIERDFQNLLEIIENQRPGYIAAMDEGVSDEIIRDCIKIHPIPEGLMAIYSCVKGL 61

Query: 65  SSDE-----EEPSLIEFIPGYRLIHIQEYAQEVKVLESILEE-KGYSGGGTVLPVLTNYG 118
           S  +     + P+  +FIPG  LI+I E+ + + +L+++    + ++    ++P L    
Sbjct: 62  SVSKLIEKFDYPT--DFIPGCDLINIYEFDKIINLLKAVHRNPEPWAWQPDMIPFLVYCD 119

Query: 119 SDFICYYQ-SEDGTERICDLLHDYGDLVVMYDSPEKFLETLCEFYKQEVYFLDEEGYLDC 177
            D+ C      D +   C   + +   + +  + E F+  + E YKQ  YFLD   YL+ 
Sbjct: 120 VDYYCVRTLPSDQSVVFCSKENQW---ITICQNIEDFILIITECYKQNAYFLD-NVYLEK 175

Query: 178 DLVLEGEVGAALNPSANYWSE 198
           +  LE ++    NP  NY+S+
Sbjct: 176 NYDLEEKIILNFNP--NYYSQ 194


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 318,100,862
Number of extensions: 13503374
Number of successful extensions: 25625
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 25624
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 79
Effective length of database: 434,140,797
Effective search space: 34297122963
Effective search space used: 34297122963
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)