BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0003.p (842 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_813625.1| periplasmic beta-glucosidase precursor, xylosid... 387 e-106 gb|AAB70867.1| beta-xylosidase [Thermotoga neapolitana] 331 5e-89 emb|CAB56857.1| beta-mannanase [Thermotoga neapolitana] 329 2e-88 ref|NP_227892.1| xylosidase [Thermotoga maritima] >gi|7462986|pi... 326 1e-87 ref|NP_466303.1| similar to beta-glucosidase [Listeria monocytog... 318 3e-85 >ref|NP_813625.1| periplasmic beta-glucosidase precursor, xylosidase/arabinosidase [Bacteroides thetaiotaomicron VPI-5482] gb|AAO79819.1| periplasmic beta-glucosidase precursor, xylosidase/arabinosidase [Bacteroides thetaiotaomicron VPI-5482] Length = 769 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/403 (47%), Positives = 262/403 (65%), Gaps = 1/403 (0%) Query: 1 MTYKDPSRPSAERAEHLLGLMTLEEKAAQLVQPFGWQAYEHTDGEITLTEDFKRQVAETG 60 + YK+P ER + LL MTLE+K QL+ P GW+ YE D E+ +E FKR + E Sbjct: 12 LPYKNPVLSVDERVKDLLSRMTLEDKVGQLLCPLGWEMYEIKDDEVHPSEKFKRLMKEKN 71 Query: 61 IGSLYGMLRADPWTGVTLASGLSPRQGAEAVNALQRYAIENSRLGIPILIGEECSHGHMA 120 G L+ RADPWT TL +GL+P A+A NALQ+Y IEN+RLGIP+ + EE HGHMA Sbjct: 72 AGMLWATYRADPWTKKTLENGLNPELAAKAGNALQKYVIENTRLGIPLFLAEEAPHGHMA 131 Query: 121 IGATVFPVPLSLGSAWNVDLYREMCRAVALETRSQGGTVTYSPVLDVVRDPRWGRTEECF 180 IG TVFP + + + W+ L E+ +A E RSQG ++Y PVLD+ RDPRW R EE F Sbjct: 132 IGTTVFPTGIGMAATWSPTLIEEVGNVIAKEIRSQGAHISYGPVLDLSRDPRWSRVEETF 191 Query: 181 GEDAYLISEMAAASVEGLQGESLSSQESVGATLKHFVGYGSSEGGRNAGPVHMGWRELLE 240 GED L + AA + GL LS + + ATLKHF+ Y EGG+N +G R+L E Sbjct: 192 GEDPVLSGRLGAAMILGLGSGDLSCEYATIATLKHFLAYAVPEGGQNGNYASVGTRDLHE 251 Query: 241 VDLLPFKKAVEAGAVSIMPAYNEIDGVPCTTNTALMEDILRGAWGFDGLVITDCGAIEML 300 L PF++A++AGA+S+M +YN IDGVPCT N L+ +LR W F G V++D +IE + Sbjct: 252 NFLPPFREAIDAGALSVMTSYNSIDGVPCTANHYLLTQLLRNEWRFRGFVVSDLYSIEGV 311 Query: 301 AAGHDVAEDGLDASVQAISSGIDMEMSGAMFGKHLVNAVRTGKLAEGILDRAVQRVLELK 360 H VA +A++QA+S+G D+++ G F +L +AV+ GK++E ++D AV RVL +K Sbjct: 312 HESHFVAPTIEEAAMQAVSAGADIDLGGDAF-MNLTHAVQFGKISEAVIDTAVCRVLRMK 370 Query: 361 FKLGLFEQPYADPDAAEQFIGSVKHRELARRLAAESIILLKNE 403 F++GLFE PY +P A + + S H +LAR++A SI+LLKNE Sbjct: 371 FEIGLFEHPYVNPKTATKIVRSKDHIKLARKVAQSSIVLLKNE 413 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 162/347 (46%), Positives = 226/347 (65%), Gaps = 6/347 (1%) Query: 489 KVAVIGPNADAPYNQLGDYTSPQQRSSIVTVLDGVRSKLGAERVLYAPGCRIKGDSREGF 548 KVAV+GPNAD YN LGDYT+PQ+ +I TVLDGV SKL +V Y GC I+ + Sbjct: 425 KVAVVGPNADNRYNMLGDYTAPQEDENIKTVLDGVISKLSPSKVEYVRGCAIRDTTVNEI 484 Query: 549 EAALACAEQADTVVMVLGGSSARDFGEGTIDLKTGASKVTEHSWSDMDCGEGIDRISLAL 608 A+ A +++ ++ V+GGSSARDF T +TGA+ E S SDM+CGEG DR +L L Sbjct: 485 AEAVEAASRSEVIIAVVGGSSARDFK--TSYQETGAAIADEKSISDMECGEGFDRATLTL 542 Query: 609 SGVQLELAQEIHKLGKPLVVVYINGRPVSEPWIEEHAHAILEAWYPGQEGGHAVADILFG 668 G Q +L + GKPL+VVYI GRP+ + W E+A A+L A YPGQEGG+A+AD+LFG Sbjct: 543 LGKQQDLLIALKATGKPLIVVYIEGRPLDKVWASEYADALLTASYPGQEGGYAIADVLFG 602 Query: 669 DVNPSGRLTISWPKDAGQLPVYYNGKRSRGKRYLEADSQPRYPFGFGLSYTSFSYSELKV 728 D NP+GRL +S P+ GQ+PVYYN K R Y+E + P Y FG+GLSYT+F YS+L+V Sbjct: 603 DYNPAGRLPVSIPRSVGQIPVYYNKKAPRNHDYVEQAASPLYTFGYGLSYTTFEYSDLQV 662 Query: 729 EPQAITADETATVTVRVENTGELTGAEVVQLYISDVASKVTRPAKELKGFRKITLSPGEA 788 ++ E V+ +V+NTG G EV QLY+ D + V +P ++LK F + L GE Sbjct: 663 IRKSPCHFE---VSFKVKNTGSYDGEEVAQLYLRDEYASVVQPLRQLKCFERFFLKRGEE 719 Query: 789 QIVEFEIGAEQLQYIGPDYQPVVEPGAFKILVGSHVNDV-LEQDLNV 834 + + F + + L I + + VVE G F+I++G+ +D+ L +D++V Sbjct: 720 KEIFFTLTEKDLSIIDRNMKRVVETGDFRIMIGASSDDIRLTKDISV 766 >gb|AAB70867.1| beta-xylosidase [Thermotoga neapolitana] Length = 778 Score = 331 bits (849), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 180/402 (44%), Positives = 252/402 (62%), Gaps = 19/402 (4%) Query: 3 YKDPSRPSAERAEHLLGLMTLEEKAAQLVQPFGWQAYEHTDGEITLTEDFKRQVAETGIG 62 Y+DPS+P R + LL MTLEEK AQL +G YE D + + + + GIG Sbjct: 4 YRDPSQPVEVRVKDLLSRMTLEEKIAQLGSVWG---YELIDERGKFKREKAKDLLKNGIG 60 Query: 63 SLYGMLRADPWTGVTLASGLSPRQGAEAVNALQRYAIENSRLGIPILIGEECSHGHMAIG 122 + T ++ L P++ AE VN +QR+ +E +RLGIP +I EEC G+M +G Sbjct: 61 QI---------TRPGGSTNLEPQEAAELVNEIQRFLVEETRLGIPAMIHEECLTGYMGLG 111 Query: 123 ATVFPVPLSLGSAWNVDLYREMCRAVALETRSQGGTVTYSPVLDVVRDPRWGRTEECFGE 182 T FP +++ S W+ DL +M A+ + R G +PVLDV RDPRWGRTEE FGE Sbjct: 112 GTNFPQAIAMASTWDPDLIEKMTAAIREDMRKLGAHQGLAPVLDVARDPRWGRTEETFGE 171 Query: 183 DAYLISEMAAASVEGLQGESLSSQESVGATLKHFVGYGSSEGGRNAGPVHMGWRELLEVD 242 YL++ M + V+GLQGE++ +E V AT+KHF GY +SEGG+N P ++ RE EV Sbjct: 172 SPYLVARMGVSYVKGLQGENI--KEGVVATVKHFAGYSASEGGKNWAPTNIPEREFREVF 229 Query: 243 LLPFKKAV-EAGAVSIMPAYNEIDGVPCTTNTALMEDILRGAWGFDGLVITDCGAIEMLA 301 L PF+ AV EA +S+M +Y+EIDGVPC N L+ DILR WGF+G+V++D A+ ML Sbjct: 230 LFPFEAAVKEARVLSVMNSYSEIDGVPCAANRRLLTDILRKDWGFEGIVVSDYFAVNMLG 289 Query: 302 AGHDVAEDGLDASVQAISSGIDMEMSGAMFGKHLVNAVRTGKLAEGILDRAVQRVLELKF 361 H +A+D +++ A+ +GID+E+ +HL + V G + E ++D AV RVL+LKF Sbjct: 290 EYHRIAKDKSESARLALEAGIDVELPKTDCYQHLKDLVEKGIVPESLIDEAVSRVLKLKF 349 Query: 362 KLGLFEQPYADPDAAEQFIGSVKHRELARRLAAESIILLKNE 403 LGLFE PY D + A+ I S HR+LA +A +SIILLKN+ Sbjct: 350 MLGLFENPYVDVEKAK--IES--HRDLALEIARKSIILLKND 387 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 208/376 (55%), Gaps = 59/376 (15%) Query: 489 KVAVIGPNADAPYNQLGDYT-----------------SPQ---------------QRSSI 516 KVA+IGPNA N LGDY +PQ SI Sbjct: 397 KVALIGPNAGEVRNLLGDYMYLAHIRALLDNIDDVFGNPQIPRENYERLKKSIEEHMKSI 456 Query: 517 VTVLDGVRSKLGAERVLYAPGCRIKGDSREGFEAALACAEQADTVVMVLGGSSARDFGEG 576 +VLD + + G + YA GC + G+ R GF+ A+ A+++D ++V+G S Sbjct: 457 PSVLDAFKEE-GID-FEYAKGCEVTGEDRSGFKEAIEVAKRSDVAIVVVGDRSGL----- 509 Query: 577 TIDLKTGASKVTEHSWSDMDCGEGIDRISLALSGVQLELAQEIHKLGKPLVVVYINGRPV 636 T+D TG S+ D +L L GVQ EL EI K GKP+V+V I GRP Sbjct: 510 TLDCTTGESR---------------DMANLKLPGVQEELVLEIAKTGKPVVLVLITGRPY 554 Query: 637 SEPWIEEHAHAILEAWYPGQEGGHAVADILFGDVNPSGRLTISWPKDAGQLPVYYNGKRS 696 S + + +AIL+ W PG+ GG A+ D+++G VNPSG+L IS+P+ AGQ+PV++ K S Sbjct: 555 SLKNLVDRVNAILQVWLPGEAGGRAIVDVIYGKVNPSGKLPISFPRSAGQIPVFHYVKPS 614 Query: 697 RGKR-----YLEADSQPRYPFGFGLSYTSFSYSELKVEPQAITADETATVTVRVENTGEL 751 G+ Y++ ++P +PFG GLSYT F YS L++EP+ + + + V VEN G++ Sbjct: 615 GGRSHWHGDYVDESTKPLFPFGHGLSYTRFEYSNLRIEPKEVPSAGEVVIKVDVENVGDM 674 Query: 752 TGAEVVQLYISDVASKVTRPAKELKGFRKITLSPGEAQIVEFEIGAEQLQYIGPDYQPVV 811 G EVVQLYI + VTRP KELKGF++++L E + V F + + L Y D + VV Sbjct: 675 DGDEVVQLYIGREFASVTRPVKELKGFKRVSLKAKEKKTVVFRLHTDVLAYYDRDMKLVV 734 Query: 812 EPGAFKILVGSHVNDV 827 EPG F+++VGS D+ Sbjct: 735 EPGEFRVMVGSSSEDI 750 >emb|CAB56857.1| beta-mannanase [Thermotoga neapolitana] Length = 821 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 180/403 (44%), Positives = 252/403 (62%), Gaps = 19/403 (4%) Query: 2 TYKDPSRPSAERAEHLLGLMTLEEKAAQLVQPFGWQAYEHTDGEITLTEDFKRQVAETGI 61 T +DPS+P R + LL MTLEEK AQL +G YE D + + + + GI Sbjct: 46 TVQDPSQPVEVRVKDLLSRMTLEEKIAQLGSVWG---YELIDERGKFKREKAKDLLKNGI 102 Query: 62 GSLYGMLRADPWTGVTLASGLSPRQGAEAVNALQRYAIENSRLGIPILIGEECSHGHMAI 121 G + T ++ L P++ AE VN +QR+ +E +RLGIP +I EEC G+M + Sbjct: 103 GQI---------TRPGGSTNLEPQEAAELVNEIQRFLVEETRLGIPAMIHEECLTGYMGL 153 Query: 122 GATVFPVPLSLGSAWNVDLYREMCRAVALETRSQGGTVTYSPVLDVVRDPRWGRTEECFG 181 G T FP +++ S W+ DL +M A+ + R G +PVLDV RDPRWGRTEE FG Sbjct: 154 GGTNFPQAIAMASTWDPDLIEKMTAAIREDMRKLGAHQGLAPVLDVARDPRWGRTEETFG 213 Query: 182 EDAYLISEMAAASVEGLQGESLSSQESVGATLKHFVGYGSSEGGRNAGPVHMGWRELLEV 241 E YL++ M + V+GLQGE++ +E V AT+KHF GY +SEGG+N P ++ RE EV Sbjct: 214 ESPYLVARMGVSYVKGLQGENI--KEGVVATVKHFAGYSASEGGKNWAPTNIPEREFREV 271 Query: 242 DLLPFKKAV-EAGAVSIMPAYNEIDGVPCTTNTALMEDILRGAWGFDGLVITDCGAIEML 300 L PF+ AV EA +S+M +Y+EIDGVPC N L+ DILR WGF+G+V++D A+ ML Sbjct: 272 FLFPFEAAVKEARVLSVMNSYSEIDGVPCAANRRLLTDILRKDWGFEGIVVSDYFAVNML 331 Query: 301 AAGHDVAEDGLDASVQAISSGIDMEMSGAMFGKHLVNAVRTGKLAEGILDRAVQRVLELK 360 H +A+D +++ A+ +GID+E+ +HL + V G + E ++D AV RVL+LK Sbjct: 332 GEYHRIAKDKSESARLALEAGIDVELPKTDCYQHLKDLVEKGIVPESLIDEAVSRVLKLK 391 Query: 361 FKLGLFEQPYADPDAAEQFIGSVKHRELARRLAAESIILLKNE 403 F LGLFE PY D + A+ I S HR+LA +A +SIILLKN+ Sbjct: 392 FMLGLFENPYVDVEKAK--IES--HRDLALEIARKSIILLKND 430 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 208/376 (55%), Gaps = 59/376 (15%) Query: 489 KVAVIGPNADAPYNQLGDYT-----------------SPQ---------------QRSSI 516 KVA+IGPNA N LGDY +PQ SI Sbjct: 440 KVALIGPNAGEVRNLLGDYMYLAHIRALLDNIDDVFGNPQIPRENYERLKKSIEEHMKSI 499 Query: 517 VTVLDGVRSKLGAERVLYAPGCRIKGDSREGFEAALACAEQADTVVMVLGGSSARDFGEG 576 +VLD + + G + YA GC + G+ R GF+ A+ A+++D ++V+G S Sbjct: 500 PSVLDAFKEE-GID-FEYAKGCEVTGEDRSGFKEAIEVAKRSDVAIVVVGDRSGL----- 552 Query: 577 TIDLKTGASKVTEHSWSDMDCGEGIDRISLALSGVQLELAQEIHKLGKPLVVVYINGRPV 636 T+D TG S+ D +L L GVQ EL EI K GKP+V+V I GRP Sbjct: 553 TLDCTTGESR---------------DMANLKLPGVQEELVLEIAKTGKPVVLVLITGRPY 597 Query: 637 SEPWIEEHAHAILEAWYPGQEGGHAVADILFGDVNPSGRLTISWPKDAGQLPVYYNGKRS 696 S + + +AIL+ W PG+ GG A+ D+++G VNPSG+L IS+P+ AGQ+PV++ K S Sbjct: 598 SLKNLVDRVNAILQVWLPGEAGGRAIVDVIYGKVNPSGKLPISFPRSAGQIPVFHYVKPS 657 Query: 697 RGKR-----YLEADSQPRYPFGFGLSYTSFSYSELKVEPQAITADETATVTVRVENTGEL 751 G+ Y++ ++P +PFG GLSYT F YS L++EP+ + + + V VEN G++ Sbjct: 658 GGRSHWHGDYVDESTKPLFPFGHGLSYTRFEYSNLRIEPKEVPSAGEVVIKVDVENVGDM 717 Query: 752 TGAEVVQLYISDVASKVTRPAKELKGFRKITLSPGEAQIVEFEIGAEQLQYIGPDYQPVV 811 G EVVQLYI + VTRP KELKGF++++L E + V F + + L Y D + VV Sbjct: 718 DGDEVVQLYIGREFASVTRPVKELKGFKRVSLKAKEKKTVVFRLHTDVLAYYDRDMKLVV 777 Query: 812 EPGAFKILVGSHVNDV 827 EPG F+++VGS D+ Sbjct: 778 EPGEFRVMVGSSSEDI 793 >ref|NP_227892.1| xylosidase [Thermotoga maritima] pir||D72421 xylosidase - Thermotoga maritima (strain MSB8) gb|AAD35170.1| xylosidase [Thermotoga maritima] Length = 778 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 177/402 (44%), Positives = 252/402 (62%), Gaps = 19/402 (4%) Query: 3 YKDPSRPSAERAEHLLGLMTLEEKAAQLVQPFGWQAYEHTDGEITLTEDFKRQVAETGIG 62 Y+DPS+P R LL MTLEEK AQL +G YE D + + +++ + GIG Sbjct: 4 YRDPSQPIEVRVRDLLSRMTLEEKVAQLGSVWG---YELIDERGKFSREKAKELLKNGIG 60 Query: 63 SLYGMLRADPWTGVTLASGLSPRQGAEAVNALQRYAIENSRLGIPILIGEECSHGHMAIG 122 + T ++ L P++ AE VN +QR+ +E +RLGIP +I EEC G+M +G Sbjct: 61 QI---------TRPGGSTNLEPQEAAELVNEIQRFLVEETRLGIPAMIHEECLTGYMGLG 111 Query: 123 ATVFPVPLSLGSAWNVDLYREMCRAVALETRSQGGTVTYSPVLDVVRDPRWGRTEECFGE 182 T FP +++ S W+ DL +M AV + R G +PVLDV RDPRWGRTEE FGE Sbjct: 112 GTNFPQAIAMASTWDPDLIEKMTTAVREDMRKIGAHQGLAPVLDVARDPRWGRTEETFGE 171 Query: 183 DAYLISEMAAASVEGLQGESLSSQESVGATLKHFVGYGSSEGGRNAGPVHMGWRELLEVD 242 YL++ M + V+GLQGE + ++ V AT+KHF GY +SEGG+N P ++ RE EV Sbjct: 172 SPYLVARMGVSYVKGLQGEDI--KKGVVATVKHFAGYSASEGGKNWAPTNIPEREFKEVF 229 Query: 243 LLPFKKAV-EAGAVSIMPAYNEIDGVPCTTNTALMEDILRGAWGFDGLVITDCGAIEMLA 301 L PF+ AV EA +S+M +Y+EIDGVPC N L+ DILR WGF+G+V++D A+++L Sbjct: 230 LFPFEAAVKEANVLSVMNSYSEIDGVPCAANRKLLTDILRKDWGFEGIVVSDYFAVKVLE 289 Query: 302 AGHDVAEDGLDASVQAISSGIDMEMSGAMFGKHLVNAVRTGKLAEGILDRAVQRVLELKF 361 H +A D +A+ A+ +GID+E+ ++L + V G ++E ++D AV RVL LKF Sbjct: 290 DYHRIARDKSEAARLALEAGIDVELPKTECYQYLKDLVEKGIISEALIDEAVTRVLRLKF 349 Query: 362 KLGLFEQPYADPDAAEQFIGSVKHRELARRLAAESIILLKNE 403 LGLFE PY + + A+ I S HR++A +A +SIILLKN+ Sbjct: 350 MLGLFENPYVEVEKAK--IES--HRDIALEIARKSIILLKND 387 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 206/376 (54%), Gaps = 59/376 (15%) Query: 489 KVAVIGPNADAPYNQLGDYT-----------------SPQ---------------QRSSI 516 KVA+IGPNA N LGDY +PQ SI Sbjct: 397 KVALIGPNAGEVRNLLGDYMYLAHIRALLDNIDDVFGNPQIPRENYERLKKSIEEHMKSI 456 Query: 517 VTVLDGVRSKLGAERVLYAPGCRIKGDSREGFEAALACAEQADTVVMVLGGSSARDFGEG 576 +VLD + + G E YA GC + G+ R GFE A+ A+++D ++V+G S Sbjct: 457 PSVLDAFKEE-GIE-FEYAKGCEVTGEDRSGFEEAIEIAKKSDVAIVVVGDKSGL----- 509 Query: 577 TIDLKTGASKVTEHSWSDMDCGEGIDRISLALSGVQLELAQEIHKLGKPLVVVYINGRPV 636 T+D TG S+ D +L L GVQ EL E+ K GKP+V+V I GRP Sbjct: 510 TLDCTTGESR---------------DMANLKLPGVQEELVLEVAKTGKPVVLVLITGRPY 554 Query: 637 SEPWIEEHAHAILEAWYPGQEGGHAVADILFGDVNPSGRLTISWPKDAGQLPVYYNGKRS 696 S + + +AIL+ W PG+ GG A+ DI++G VNPSG+L IS+P+ AGQ+PV++ K S Sbjct: 555 SLKNVVDKVNAILQVWLPGEAGGRAIVDIIYGKVNPSGKLPISFPRSAGQIPVFHYVKPS 614 Query: 697 RGKR-----YLEADSQPRYPFGFGLSYTSFSYSELKVEPQAITADETATVTVRVENTGEL 751 G+ Y++ ++P +PFG GLSYT F YS L++EP+ + + V VEN G+ Sbjct: 615 GGRSHWHGDYVDESTKPLFPFGHGLSYTKFEYSNLRIEPKEVPPAGEVVIKVDVENIGDR 674 Query: 752 TGAEVVQLYISDVASKVTRPAKELKGFRKITLSPGEAQIVEFEIGAEQLQYIGPDYQPVV 811 G EVVQLYI + VTRP KELKGF++++L E + V F + + L Y D + VV Sbjct: 675 DGDEVVQLYIGREFASVTRPVKELKGFKRVSLKAKEKKTVVFRLHMDVLAYYNRDMKLVV 734 Query: 812 EPGAFKILVGSHVNDV 827 EPG FK++VGS D+ Sbjct: 735 EPGEFKVMVGSSSEDI 750 >ref|NP_466303.1| similar to beta-glucosidase [Listeria monocytogenes EGD-e] pir||AD1422 beta-glucosidase homolog lmo2781 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00994.1| lmo2781 [Listeria monocytogenes] Length = 756 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 169/404 (41%), Positives = 239/404 (59%), Gaps = 14/404 (3%) Query: 2 TYKDPSRPSAERAEHLLGLMTLEEKAAQLVQP-FGWQAYEHTDGEITLTEDFKRQVAE-T 59 Y D +P +ER E LL MTL EK QL Q +GW+A+ +TE FK +V Sbjct: 3 VYLDKEKPVSERVEDLLSKMTLAEKCGQLNQRMYGWEAFSRDGETFQITEKFKEEVTRFE 62 Query: 60 GIGSLYGMLRADPWTGVTLASGLSPRQGAEAVNALQRYAIENSRLGIPILIGEECSHGHM 119 GIG+LYG+ RADPW+ + +G+S + + N +QRY IEN+RLGIP+L+ EE HGH Sbjct: 63 GIGALYGLFRADPWSKMNKDTGVSRKNAGKVANKIQRYVIENTRLGIPVLLAEEVPHGHQ 122 Query: 120 AIGATVFPVPLSLGSAWNVDLYREMCRAVALETRSQGGTVTYSPVLDVVRDPRWGRTEEC 179 A+ + +PV L+ +++N +L +++ A+ E +G + + LDV+RDPRWGR EEC Sbjct: 123 ALDSESYPVNLARAASFNPELQKQVASAITEEISEKGVHLALASALDVLRDPRWGRAEEC 182 Query: 180 FGEDAYLISEMAAASVEGLQGESLSSQESVGATLKHFVGYGSSEGGRNAGPVHMGWRELL 239 +GED YL +E+ AA EG Q + LKHF G GG N+GPV +G REL Sbjct: 183 YGEDPYLAAELTAAITEGFQASG-----KIAVILKHFAAQGEPIGGHNSGPVSIGVRELR 237 Query: 240 EVDLLPFKKAVEAGAVSIMPAYNEIDGVPCTTNTALMEDILRGAWGFDGLVITDCGAIEM 299 E+ L P + + +GA+ +M AYNEIDGVPC N L+ ILR GF G+V+ D A++ Sbjct: 238 EIFLDPMRAGIRSGALGVMAAYNEIDGVPCHANKELLTTILREEMGFSGIVMADGCALDR 297 Query: 300 LAAGHDVAEDGLDASVQAISSGIDMEMSGAMFGKHLVNAVRTGKLAEGILDRAVQRVLEL 359 L + D A+ A+ +G+D+ + +F L +V G L E I+D AV RVL++ Sbjct: 298 LL---KLNPDPKKAAKMALEAGVDLSLWDEVF-PFLEESVEKGILDEKIVDDAVSRVLQV 353 Query: 360 KFKLGLFEQPYADPDAAEQFIGSVKHRELARRLAAESIILLKNE 403 KF+LGLFEQP+ + D E R+L + A E I LLKN+ Sbjct: 354 KFQLGLFEQPFVEEDIQEP---KSDWRQLNLQAAREGICLLKND 394 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 141/356 (39%), Positives = 215/356 (60%), Gaps = 12/356 (3%) Query: 489 KVAVIGPNADAPYNQLGDYTSPQQRSSIVTVLDGVRSKLGAE-RVLYAPGCRIKGDSREG 547 K+AV+GP+ D+ YNQLGDYT+PQ S VTVL+G++++L VL G I+ + +G Sbjct: 406 KIAVVGPSIDSLYNQLGDYTAPQNESECVTVLEGIKNQLPENWEVLSEKGAEIREELPDG 465 Query: 548 FEAALACAEQADTVVMVLGGSSARDFGEGTIDLKTGASKVTEHSWSDMDCGEGIDRISLA 607 + A A++AD +VMVLGGSSAR+F D++ + +MD GE +D + Sbjct: 466 IQRAEVVAKEADAIVMVLGGSSARNF-----DMEFLNNGAVSSKGPNMDAGENVDVADIT 520 Query: 608 LSGVQLELAQEIHKLGKPLVVVYINGRPVSEPWIEEHAHAILEAWYPGQEGGHAVADILF 667 L QL+L + + GKP++VV I GRP++ P I A AIL AWYPG GG A+A++LF Sbjct: 521 LPQPQLDLFYAMKRTGKPVIVVMIQGRPIAIPEISLAADAILTAWYPGSLGGTAIAEVLF 580 Query: 668 GDVNPSGRLTISWPKDAGQLPVYYNGKRSRGKR-YLEADSQPRYPFGFGLSYTSFSYSEL 726 G NPSG+L +S P+ +GQ+P+YYN K K Y + +P YPFG+GLSY++F Y +L Sbjct: 581 GHYNPSGKLPVSIPRSSGQIPIYYNQKAVEYKEDYFDLTGKPLYPFGYGLSYSTFEYQDL 640 Query: 727 KVEPQAITADE-----TATVTVRVENTGELTGAEVVQLYISDVASKVTRPAKELKGFRKI 781 +++ ++I E + V V ++N + G EVVQLYI D+ + +TR KELK F+K+ Sbjct: 641 QIKQESIKISELLGGQSVEVKVTLKNISNVAGEEVVQLYIHDMEASITRRKKELKAFKKV 700 Query: 782 TLSPGEAQIVEFEIGAEQLQYIGPDYQPVVEPGAFKILVGSHVNDVLEQDLNVMEG 837 ++ + V F++ + + + VEPG +I VG + L ++++ G Sbjct: 701 RIAANQTTTVTFKLDKSSFEIWSINNKYEVEPGGIEIFVGGSSDTKLTGRVSIIGG 756 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,109,742,152 Number of extensions: 46084566 Number of successful extensions: 110481 Number of sequences better than 1.0e-05: 699 Number of HSP's gapped: 108196 Number of HSP's successfully gapped: 1002 Length of query: 842 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 708 Effective length of database: 393,414,312 Effective search space: 278537332896 Effective search space used: 278537332896 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)