BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0078.0001.p (138 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00037452.1| COG0395: ABC-type sugar transport system, per... 151 6e-36 ref|NP_242732.1| sugar transport system (permease) (binding prot... 137 1e-31 ref|NP_815893.1| ABC transporter, permease protein [Enterococcus... 132 2e-30 ref|NP_826558.1| putative sugar transport inner membrane protein... 131 4e-30 ref|NP_626895.1| putative sugar transport membrane protein [Stre... 130 1e-29 >ref|ZP_00037452.1| COG0395: ABC-type sugar transport system, permease component [Enterococcus faecium] Length = 284 Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 69/125 (55%), Positives = 95/125 (76%) Query: 11 GGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWN 70 G AFNIFL+RQFYLSI +L EAA +DGA+H I+ +++PLT+PAL+ + + +F A+WN Sbjct: 156 GNAFNIFLMRQFYLSINNELIEAAEIDGANHLYIWSHLMLPLTKPALITIAINSFNAAWN 215 Query: 71 DFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIEG 130 DFLGPL+Y+ + KYTL +GLQ F+ +W+ +MA AT+VL P I++FF QRYFIEG Sbjct: 216 DFLGPLLYIQDQEKYTLQIGLQVFQNQATTQWNYLMAGATLVLIPTILLFFFAQRYFIEG 275 Query: 131 ITLTG 135 + LTG Sbjct: 276 MDLTG 280 >ref|NP_242732.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] pir||B83883 sugar transport system (permease) (binding protein dependent transporter) BH1866 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05585.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] Length = 285 Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 63/130 (48%), Positives = 88/130 (67%) Query: 8 GCAGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLA 67 G G A +F LRQF+++IP DL +AA +DG S + IF I++PL +PA+V + LA Sbjct: 155 GFFGAAMTVFFLRQFFMTIPNDLIDAAKIDGLSFFGIFRKIMVPLAKPAIVTQVILGLLA 214 Query: 68 SWNDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYF 127 +NDF+GPL+YLNS +TL L L F+G Y +EW L+MA + + L P +V FF Q+ F Sbjct: 215 GYNDFMGPLIYLNSPENFTLQLVLASFRGYYTSEWGLIMAGSVIALIPTLVAFFFAQKQF 274 Query: 128 IEGITLTGIK 137 IEGI +TG+K Sbjct: 275 IEGIVMTGVK 284 >ref|NP_815893.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81963.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 292 Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/128 (47%), Positives = 90/128 (70%) Query: 10 AGGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASW 69 A AF +FLL+Q+Y SIP L E+A +DG S W I+ II+PLT+PAL + + TF+ +W Sbjct: 164 AFNAFGVFLLKQYYSSIPDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTW 223 Query: 70 NDFLGPLVYLNSESKYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 ND++GP +YL+S T+ LGL+ F G++ AE+ L+MAA+ V + P +VF Q+YF+E Sbjct: 224 NDYMGPFIYLSSTENKTIQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVE 283 Query: 130 GITLTGIK 137 GI +G+K Sbjct: 284 GIATSGMK 291 >ref|NP_826558.1| putative sugar transport inner membrane protein [Streptomyces avermitilis MA-4680] dbj|BAC73093.1| putative sugar transport inner membrane protein [Streptomyces avermitilis MA-4680] Length = 297 Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 1/128 (0%) Query: 11 GGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWN 70 G AF+IFLLRQF ++IP + +AA VDG R + +++P+ RP + V LF F +WN Sbjct: 169 GDAFSIFLLRQFLMTIPNEYLDAAKVDGCGDLRTLLKVVLPMARPGIAAVALFQFFYAWN 228 Query: 71 DFLGPLVYLNSES-KYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 D+ GP +Y + +TL+ GL+ FKG + +W+L MAA +V+AP I+VFF Q+ F+E Sbjct: 229 DYFGPQIYASENPGAWTLSYGLESFKGAHHTDWNLTMAATVLVMAPVILVFFFAQKAFVE 288 Query: 130 GITLTGIK 137 G+TLTG+K Sbjct: 289 GVTLTGVK 296 >ref|NP_626895.1| putative sugar transport membrane protein [Streptomyces coelicolor A3(2)] emb|CAB71198.1| putative sugar transport membrane protein [Streptomyces coelicolor A3(2)] Length = 303 Score = 130 bits (327), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 59/128 (46%), Positives = 87/128 (67%), Gaps = 1/128 (0%) Query: 11 GGAFNIFLLRQFYLSIPRDLDEAAYVDGASHWRIFISIIIPLTRPALVVVGLFTFLASWN 70 G AF+IFLLRQF L+IP + +AA VDG R + +++P+ +P + V LF F +WN Sbjct: 175 GDAFSIFLLRQFLLTIPDEYLDAAKVDGCGELRTLLRVVLPMAKPGIAAVALFQFFYAWN 234 Query: 71 DFLGPLVYLNSES-KYTLALGLQQFKGMYAAEWHLMMAAATVVLAPAIVVFFIGQRYFIE 129 D+ GP +Y + +TL+ GL+ FKG + +W+L MAA +V+AP I+VFF Q+ F+E Sbjct: 235 DYFGPQIYASENPGAWTLSYGLESFKGAHHTDWNLTMAATVLVMAPVILVFFFAQKAFVE 294 Query: 130 GITLTGIK 137 G+TLTG+K Sbjct: 295 GVTLTGVK 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.144 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 205,998,953 Number of extensions: 7846573 Number of successful extensions: 26935 Number of sequences better than 1.0e-05: 1293 Number of HSP's gapped: 26403 Number of HSP's successfully gapped: 1293 Length of query: 138 Length of database: 757,237,578 Length adjustment: 99 Effective length of query: 39 Effective length of database: 488,442,777 Effective search space: 19049268303 Effective search space used: 19049268303 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 120 (50.8 bits)