BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0013.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans]... 427 e-118 ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans]... 325 7e-88 ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans]... 228 2e-58 ref|NP_814959.1| ABC transporter, permease protein [Enterococcus... 224 3e-57 ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halo... 222 1e-56 >ref|NP_242777.1| transmembrane lipoprotein [Bacillus halodurans] pir||G83888 transmembrane lipoprotein lplB [imported] - Bacillus halodurans (strain C-125) dbj|BAB05630.1| transmembrane lipoprotein [Bacillus halodurans] Length = 319 Score = 427 bits (1098), Expect = e-118, Method: Compositional matrix adjust. Identities = 200/294 (68%), Positives = 244/294 (82%) Query: 25 QQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPGKSFFEQKWVGLQYFRELFQDEQF 84 QQKYLY+M++PFV W VFNY PLWGWTMAFQ ++PG SFFEQ+WVGLQ+F ELFQD +F Sbjct: 26 QQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRF 85 Query: 85 FNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFLKRFVQTVSYLPHFVSWVVAAGII 144 + LRNTLAMS+MGL+ GF +PI+FAVLLNE+R + KR VQTVSYLPHFVSWVV AGI+ Sbjct: 86 YLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIV 145 Query: 145 TKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGIVTASDVWKETGWNTIIYLAAISG 204 TKMLS D G VN LLM+ + +P+QFMAKG FW IVT SD+WKE GWN+II+LAA++G Sbjct: 146 TKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAG 205 Query: 205 IGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLIMSIGHLISIGFEKQFLLGNNLVR 264 I P+LYEAA+VDGASR +Q+ +ITLPGIR T++++LI+SIGHL++IGFEKQFLLGN LV Sbjct: 206 IDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVV 265 Query: 265 DYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXXXXXXXANGIFKKITKESII 318 DYS+ LDLYALNYGLGLGR+S+GTAI IFN ANGIFK+ T +S++ Sbjct: 266 DYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSVM 319 >ref|NP_242978.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83913 transmembrane lipoprotein BH2112 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05831.1| transmembrane lipoprotein [Bacillus halodurans] Length = 337 Score = 325 bits (834), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 154/318 (48%), Positives = 220/318 (69%), Gaps = 6/318 (1%) Query: 6 AKVQPEPKKPASR------FWPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYK 59 A ++ PK PA + F+ K +QK L +M++PF++W +F Y+PL+GW++AFQ ++ Sbjct: 19 APIKQPPKTPAGKPTGIKLFFKKCYEQKALLLMSLPFLIWLIIFRYVPLYGWSIAFQDFR 78 Query: 60 PGKSFFEQKWVGLQYFRELFQDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQI 119 P + F+Q W G ++F LF D +FF LRNTLAMSL+ L+ GF+ I A+LLNELR + Sbjct: 79 PARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFVTAIGLAILLNELRNL 138 Query: 120 FLKRFVQTVSYLPHFVSWVVAAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFW 179 KR VQT+SY+PHF+SWVVAAG+++ LS +NG +N +LM L +ISEPI ++ G FW Sbjct: 139 TFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLGMISEPIMWLGVGEYFW 198 Query: 180 GIVTASDVWKETGWNTIIYLAAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIIL 239 GI+ ASDVWK GWNTIIYLAAI+ I E YEAA +DGA+RLQ++ ITLPG+R ++IL Sbjct: 199 GIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGATRLQRIWYITLPGMRPVIVIL 258 Query: 240 LIMSIGHLISIGFEKQFLLGNNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXX 299 LIM++G+++ GFE Q+LL N + D+++ LD++ L YG+ +G FS TA IF Sbjct: 259 LIMNLGYILESGFEAQYLLMNPMNMDFAENLDIFVLRYGINMGNFSLATAAGIFKTVVSF 318 Query: 300 XXXXXANGIFKKITKESI 317 AN I K++ + + Sbjct: 319 IFLFSANHIAKRLGEARL 336 >ref|NP_241350.1| transmembrane lipoprotein [Bacillus halodurans] pir||D83710 transmembrane lipoprotein BH0484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04203.1| transmembrane lipoprotein [Bacillus halodurans] Length = 325 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 117/296 (39%), Positives = 184/296 (62%), Gaps = 2/296 (0%) Query: 22 KFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPGKSFFEQKWVGLQYFRELFQD 81 + + KYLY+M +P +++ +F Y+P+WG +AFQ Y+P +WVG ++F LF + Sbjct: 31 RIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFTE 90 Query: 82 EQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFLKRFVQTVSYLPHFVSWVVAA 141 FF LRNTL + L L+ F +PI+ AVLLNE+R + KRFVQT+ Y+PHF+SWV+ Sbjct: 91 PTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIVV 150 Query: 142 GIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGIVTASDVWKETGWNTIIYLAA 201 + + +TD G +N+++ S + + + F+ + F + +W+E GW TIIY AA Sbjct: 151 SLTYVLFTTDGGVINEIIYS--ITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAA 208 Query: 202 ISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLIMSIGHLISIGFEKQFLLGNN 261 I+ I P LYEAA++DGA+R +Q+ +ITLP IR+ +++LLI+ IG ++ +GFE FL+ N Sbjct: 209 IAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNA 268 Query: 262 LVRDYSQTLDLYALNYGLGLGRFSFGTAINIFNXXXXXXXXXXANGIFKKITKESI 317 + R+ ++ D Y GL G+FS+ TA+ F AN + KK +E + Sbjct: 269 MNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGV 324 >ref|NP_814959.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81029.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 303 Score = 224 bits (570), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 112/271 (41%), Positives = 174/271 (64%), Gaps = 1/271 (0%) Query: 22 KFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPGKSFFEQKWVGLQYFRELFQD 81 KF Q+ L+ M +P V + VFNY+P++G +AF+ Y + WVGL+ FR + +D Sbjct: 6 KFYDQRQLHWMVLPGVAFMIVFNYIPIYGIIIAFKNYTIVDTVSSAPWVGLENFRIIMED 65 Query: 82 EQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFLKRFVQTVSYLPHFVSWVVAA 141 F+ A+RNTLA+SLM L GF IPI+ AV++ E+R LK+ +QT+SY+PHF SW+V Sbjct: 66 SFFWEAVRNTLAISLMKLFLGFAIPIILAVMIFEMRDGHLKKVIQTISYIPHFFSWIVLG 125 Query: 142 GIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGIVTASDVWKETGWNTIIYLAA 201 G++ LST NG +N ++MSL L+++ + + + +W I SD+WKE GW TI+YLA Sbjct: 126 GMLISWLST-NGFINQVMMSLGLMNQGVNHLLDPDKYWWIAVLSDLWKEVGWGTILYLAG 184 Query: 202 ISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLIMSIGHLISIGFEKQFLLGNN 261 +S I P YEAAR+DGAS+L Q+R ITLP + + + LI+++ L+ ++ +L N Sbjct: 185 MSRIDPTFYEAARIDGASKLTQIRTITLPLLAPIISLNLILNVSGLLGSNLDQTLVLMNA 244 Query: 262 LVRDYSQTLDLYALNYGLGLGRFSFGTAINI 292 ++ S+ ++ + GL G FS+ TA+ + Sbjct: 245 QNQNKSEVINSFVYRMGLTQGDFSYATAVGL 275 >ref|NP_241931.1| BH1065~unknown conserved protein [Bacillus halodurans] pir||A83783 hypothetical protein BH1065 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04784.1| BH1065~unknown conserved protein [Bacillus halodurans] Length = 317 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 185/292 (63%), Gaps = 3/292 (1%) Query: 2 KAITAKVQPEPKKPASRFWPKFLQQKYLYMMAVPFVLWAFVFNYLPLWGWTMAFQKYKPG 61 +A+T+ + +K + W F + L+++ +P ++ A +F Y P++G MAFQ YKP Sbjct: 4 QAVTSNAKTVERKLKKQKW-NFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPW 62 Query: 62 KSFFEQKWVGLQYFRELFQDEQFFNALRNTLAMSLMGLLAGFIIPIVFAVLLNELRQIFL 121 F +WVGLQ+F +F+ + + NTL +S++ ++ G I+PI+ A+LLNE+ Q+ + Sbjct: 63 LGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVV 122 Query: 122 KRFVQTVSYLPHFVSWVVAAGIITKMLSTDNGAVNDLLMSLHLISEPIQFMAKGNLFWGI 181 KR VQT+ YLP+F+SWV+ GI+ +LS D G VN L + +PI F+ + F Sbjct: 123 KRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGI--DPIFFLGSNDWFRTT 180 Query: 182 VTASDVWKETGWNTIIYLAAISGIGPELYEAARVDGASRLQQVRNITLPGIRTTVIILLI 241 V SD+WKETG+NTI++LAAI+ + P LYEAA VDGA+R +Q +ITLP + +I++ Sbjct: 181 VVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVAT 240 Query: 242 MSIGHLISIGFEKQFLLGNNLVRDYSQTLDLYALNYGLGLGRFSFGTAINIF 293 +S+G++++ GF++ F L N LV +D Y L G FS+GTA+ +F Sbjct: 241 LSLGNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLF 292 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.141 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 437,221,512 Number of extensions: 17136610 Number of successful extensions: 59734 Number of sequences better than 1.0e-05: 904 Number of HSP's gapped: 59280 Number of HSP's successfully gapped: 904 Length of query: 318 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 193 Effective length of database: 417,850,203 Effective search space: 80645089179 Effective search space used: 80645089179 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)