BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0009.p (955 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellu... 198 4e-49 ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellu... 182 5e-44 dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61] 181 7e-44 ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella th... 108 6e-22 ref|ZP_00100195.1| COG3468: Type V secretory pathway, adhesin Ai... 105 5e-21 >ref|ZP_00060097.1| hypothetical protein [Clostridium thermocellum ATCC 27405] pir||JC6031 scaffoldin dockerin binding protein precursor - Clostridium thermocellum gb|AAB07763.1| SdbA Length = 631 Score = 198 bits (504), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 174/326 (53%), Gaps = 13/326 (3%) Query: 630 SLEIQTVVGAVVLPGGML-TAE--QAAQNAAVV-LRISAADAGSLPAEITAASAGRPVVK 685 L I T G + +P ML TA+ + +N +VV I L AE+ RPV+ Sbjct: 312 KLRIATEQGIIEVPANMLNTADISKLVKNDSVVEFVIRKVKVDELGAELKEKIGNRPVID 371 Query: 686 LSLSIGGKEISWQKSPAQVQVSIPYRLTAAELLNSDYLTVRYIDEAGVSHPVASGKYDPV 745 +S+ + GK++ W A+V++SIPY+ A EL N +++ V +ID+AG + V SGKY+P Sbjct: 372 ISVVVDGKKVEWSNYKAKVKISIPYKPDAKELENHEHIVVLHIDDAGKAVSVPSGKYEPS 431 Query: 746 SAAVTFTARHFSTYAVVMNRISFNDLDASHWAKKPVEVLAAKGIVNGVSAGSYAPAAQIS 805 VTF H S YAV +F D+ + WAKK +EVLA+KG++NG S ++ P A I+ Sbjct: 432 LGVVTFETNHLSKYAVSYVYKTFADIGSYAWAKKQIEVLASKGVINGTSDTTFTPQADIT 491 Query: 806 RADYAVMLVRAFGLDGSAEAAATRFTDVLPGSYYYEAVNTAKALGIASGNTDGSFNPAGI 865 RAD+ ++LV+A GL +AE + F DV YYYE V AK LGI +G + FNP Sbjct: 492 RADFMILLVKALGL--TAE-VTSNFDDVSEKDYYYEYVGIAKELGITTGVGNNKFNPKAK 548 Query: 866 ITRQEMIVMTDRALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRMLQIGW 925 ITRQ+M+V+T AL V +++ G Sbjct: 549 ITRQDMMVLTTNAL------RIAGKISSTGTRADVERFSDKDQIASYAVEGVATLVKEGI 602 Query: 926 LQGNSGLIQPEGTASRAEAAVLLYRI 951 + G+ +I P G ASRAE A ++Y+I Sbjct: 603 VVGSGDIINPRGNASRAELAAIIYKI 628 >ref|ZP_00060727.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 2547 Score = 182 bits (461), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 108/360 (30%), Positives = 178/360 (49%), Gaps = 12/360 (3%) Query: 598 KRVVIAVNQAAGATAYEVXXXXXXXXXXXTGQSLEIQTVVGAVVLPGGMLTAEQAAQNAA 657 K+V I + +A G YE +G+ +EI+T V V +P M + + + Sbjct: 2193 KKVSIEIKKADGVEVYEQKLPSSIFTDTESGRKIEIKTPVATVEIPLDMFEEKDIEKAES 2252 Query: 658 VVLRISAADAGSLPAEITAASAGRPVVKLSLSIGGKEISWQKSPAQVQVSIPYRLTAAEL 717 + +R+S +A L E A RPV++L + + G+ I+W+ + +++S+ Y EL Sbjct: 2253 ISVRVSKVEASDLSMEQKAQIGDRPVIQLEVLVDGRLINWRSNKTSIKISVDYTPKGDEL 2312 Query: 718 LNSDYLTVRYIDEAGVSHPVASGKYDPVSAAVTFTARHFSTYAVVMNRISFNDLDASHWA 777 +D + V Y+ ++G + Y + V F+ + YAV SF+DL WA Sbjct: 2313 KKTDRIFVWYVGDSGKLSAIPMAVYKEDAGKVIFSVQQSGKYAVAYRYKSFDDLKGYDWA 2372 Query: 778 KKPVEVLAAKGIVNGVSAGSYAPAAQISRADYAVMLVRAFGLDGSAEAAATR-FTDVLPG 836 K+ +E+LA+KGI+NG S+ Y+P I+RAD +++V+A GL EA T F DV Sbjct: 2373 KEQIEILASKGIINGTSSTKYSPGLNITRADAVILIVKALGL----EAEFTENFDDVSAD 2428 Query: 837 SYYYEAVNTAKALGIASGNTDGSFNPAGIITRQEMIVMTDRALXXXXXXXXXXXXXXXXX 896 YYYEAV A++ GI +G + FNP ITRQE++V+ +RAL Sbjct: 2429 KYYYEAVGIARSFGIVTGVGNNKFNPETPITRQELMVIVNRAL------KVVGINLDTGD 2482 Query: 897 XXXXXXXXXXXXXXXXXXXXVNRMLQIGWLQGNSG-LIQPEGTASRAEAAVLLYRICTEL 955 V +++ G ++G+ LI P +RAE AV++Y++ ++ Sbjct: 2483 VSELEAFKDFSEISPYAVESVAALVKAGIIKGDDNKLIAPLRNITRAETAVIIYKLFEKM 2542 >dbj|BAC45001.1| xylanase 5 [Paenibacillus sp. W-61] Length = 1326 Score = 181 bits (460), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 125/357 (35%), Positives = 175/357 (49%), Gaps = 15/357 (4%) Query: 598 KRVVIAVNQAAGATAYEVXXXXXXXXXXXTGQSLEIQTVVGAVVLPGGMLT--AEQAAQN 655 K+V I V + A A +Y V ++T + +P ML+ EQA Q Sbjct: 981 KQVSIEVPKQANAQSY-VVQLPTSSLQSNNNVEFVLKTDHATLQIPSNMLSNMTEQADQ- 1038 Query: 656 AAVVLRISAADAGSLPAEITAASAGRPVVKLSLSIGGKEISWQKSPAQVQVSIPYRLTAA 715 V ++I A L AE+ A RPV+ LS+ G + ++W A V VS+PY Sbjct: 1039 --VSIQIRKVLADRLDAEVRAKVGSRPVIDLSIKAGDRVLAWNNPAAPVTVSVPYTPAGQ 1096 Query: 716 ELLNSDYLTVRYIDEAGVSHPVASGKYDPVSAAVTFTARHFSTYAVVMNRISFNDLDASH 775 EL+N+ L + ID G + V +G+YD S + F FSTYAV SF D+ Sbjct: 1097 ELVNAHQLVILNIDSQGKTIVVPNGRYDAKSGSAVFKTTEFSTYAVAYVTKSFADVQHVL 1156 Query: 776 WAKKPVEVLAAKGIVNGVSAGSYAPAAQISRADYAVMLVRAFGLDGSAEAAATRFTDVLP 835 WAK+ +E +AA+ I+ G+S S+APAA I+RAD+ +LVRA L G AA F+DV Sbjct: 1157 WAKEAIEAMAARDIIKGISDESFAPAASITRADFITLLVRALELKGKDTNAAA-FSDVQS 1215 Query: 836 GSYYYEAVNTAKALGIASGNTDGSFNPAGIITRQEMIVMTDRALXXXXXXXXXXXXXXXX 895 +YY +AV AK LGIASG D +F P I+RQ+M+V+T +AL Sbjct: 1216 TAYYAQAVAIAKELGIASGFEDNTFKPGSSISRQDMMVLTAKAL--------KAAGKPST 1267 Query: 896 XXXXXXXXXXXXXXXXXXXXXVNRMLQIGWLQGNSGLIQPEGTASRAEAAVLLYRIC 952 V ++ G + G G I P + +RAEAAV+L RI Sbjct: 1268 GSGNLAPYSDAASISTYAVDSVTSLVGSGIVNGKGGKIAPTESLTRAEAAVILSRIW 1324 >ref|ZP_00181616.1| hypothetical protein Mther037501 [Moorella thermoacetica ATCC 39073] Length = 308 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 12/234 (5%) Query: 641 VLPGGMLTAEQAAQNAAV-VLRISAADA--GSLPAEITAASAGRPVVKLSLSIGGKEISW 697 ++P +L A N A VL + A A G+LPA + A+ V+++ L + Sbjct: 1 MIPPEILADPAATINFAFQVLDTTEAQAVTGNLPASMRQAA---DVIEIDLYTVKGDNQQ 57 Query: 698 QKSPAQ-VQVSIPYRLTAAELLNSDYLTVRYIDEAGVSHPVASGKYDPVSAAVTFTARHF 756 +PA+ V +++ YR E +++D L V + A + G+ D + +++ F Sbjct: 58 MVTPAKPVTLTLTYR---PEGVDADKLGVYRYNVAAGTWEYKGGRVDKATNSISAVLNSF 114 Query: 757 STYAVVMNRISFNDLDASHWAKKPVEVLAAKGIVNGVSAGSYAPAAQISRADYAVMLVRA 816 S Y V+ +F+D+ HWA++ +E++AA+ + G+SA + P Q++RA++ L+R Sbjct: 115 SKYTVLAYDKTFSDIQG-HWAQRDIEIMAARHVAAGISASEFKPEGQVTRAEFTAFLLRT 173 Query: 817 FGLDGSAEAAATRFTDVLPGSYYYEAVNTAKALGIASGNTDGSFNPAGIITRQE 870 G+ +AA RF D+ PG +YY AV TA G+ +G DGSF P I+RQE Sbjct: 174 LGI-SEDRSAANRFADIQPGDWYYGAVVTASRTGLVAGYEDGSFRPDKAISRQE 226 >ref|ZP_00100195.1| COG3468: Type V secretory pathway, adhesin AidA [Desulfitobacterium hafniense] Length = 2207 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/314 (27%), Positives = 141/314 (44%), Gaps = 21/314 (6%) Query: 646 MLTAEQAAQNAAVVLRISAA--DAGSLPAEITAASAGRPVVKLSLSIG-GKEISWQKSPA 702 + T ++ + A + I+A ++G L E A RPV L ++ G GK +S Sbjct: 1803 LATVQEINKQAKSDVNITATRTNSGKLTGEAKKAIGSRPVFDLKVNYGNGKAVS-SFGAG 1861 Query: 703 QVQVSIPYRLTAAELLNSDYLTVRYIDEAGVSHPVASGKYDPVSAAVTFTARHFSTYAVV 762 V V+IPY L A E + + Y+D G H + + YD V + F+ HFS Y + Sbjct: 1862 SVSVTIPYTLGANE--KAGNVQAVYVDSKGKVHWLVNSVYDSVEKVLRFSTDHFSIYGIG 1919 Query: 763 MNR--ISFNDLDASHWAKKPVEVLAAKGIVNGVSAGSYAPAAQISRADYAVMLVRAFGLD 820 + +F D+ A HWAK+ +E +A++G+ G S ++P ++R + L R D Sbjct: 1920 YKQANTAFTDI-AGHWAKEDIEFVASRGLFGGTSETKFSPNTAMTRGMFVTALGRLANAD 1978 Query: 821 GSAEAAATRFTDVLPGSYYYEAVNTAKALGIASGNTDGSFNPAGIITRQEM-IVMTDRAL 879 S A ++ F+DV +YY + A I +G +G F P ITR++M ++M++ A Sbjct: 1979 VSGYAKSS-FSDVQDDAYYMGYIEWASKNNIVNGVGNGKFAPDQSITREQMAVIMSNYA- 2036 Query: 880 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRMLQIGWLQGNSG-LIQPEGT 938 V +M G + G +G L P+GT Sbjct: 2037 --------KTIGYTLPKVHIENIFTDNAKISTYAKEAVKQMQMAGVISGKNGNLYDPQGT 2088 Query: 939 ASRAEAAVLLYRIC 952 A+RAE + +L R Sbjct: 2089 ATRAEVSAVLRRFV 2102 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.128 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,090,997,611 Number of extensions: 41404970 Number of successful extensions: 110508 Number of sequences better than 1.0e-05: 91 Number of HSP's gapped: 110442 Number of HSP's successfully gapped: 108 Length of query: 955 Length of database: 757,237,578 Length adjustment: 135 Effective length of query: 820 Effective length of database: 390,699,213 Effective search space: 320373354660 Effective search space used: 320373354660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)