BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0003.p (282 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_669199.1| putative inner membrane permease of oligogalact... 257 2e-67 ref|NP_405294.1| putative sugar ABC transporter (permease) [Yers... 257 2e-67 ref|NP_384221.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPOR... 252 8e-66 ref|NP_241985.1| lactose transport system (permease) [Bacillus h... 251 1e-65 gb|AAQ87069.1| Oligogalacturonate transport system permease prot... 247 2e-64 >ref|NP_669199.1| putative inner membrane permease of oligogalacturonide ABC transporter [Yersinia pestis KIM] gb|AAM85450.1| putative inner membrane permease of oligogalacturonide ABC transporter [Yersinia pestis KIM] Length = 328 Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 109/271 (40%), Positives = 195/271 (71%), Gaps = 4/271 (1%) Query: 13 HISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTFAHF 71 +I L++V L+M+YP+ W A+ K N E+ ++ L+P+ P F +GW + + F H+ Sbjct: 61 YIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDGFINGWKTGTEYNFGHY 120 Query: 72 YLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMF 131 LNTF+ V + ++++ ++VA+ F+R + P + FWF ++ T++LP+ V ++PQY+MF Sbjct: 121 MLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVLLIPQYIMF 180 Query: 132 SKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRI 191 + G +N+YLP Y+P FA FF+++L+QF+R VP++++EAA+IDGC+ F + W + Sbjct: 181 REMGMLNSYLPLYLPLAFATQ---GFFVFMLIQFLRGVPRDMEEAAQIDGCNSFQVLWYV 237 Query: 192 MLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLA 251 ++P++KPA+++VA++ F+W+ +DF G ++Y+ ++DKY I LALK+ ID PW ++LA Sbjct: 238 VVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPWNEILA 297 Query: 252 MSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 M+ +SI+PS+++FFLAQ++FV+G+++ +KG Sbjct: 298 MASISILPSIIVFFLAQRYFVQGVTSSGIKG 328 >ref|NP_405294.1| putative sugar ABC transporter (permease) [Yersinia pestis] ref|NP_993097.1| putative sugar ABC transporter (permease) [Yersinia pestis biovar Mediaevails str. 91001] pir||AI0209 probable sugar ABC transporter (permease) YPO1721 [imported] - Yersinia pestis (strain CO92) emb|CAC90541.1| putative sugar ABC transporter (permease) [Yersinia pestis CO92] gb|AAS61974.1| putative sugar ABC transporter (permease) [Yersinia pestis biovar Mediaevails str. 91001] Length = 306 Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 109/271 (40%), Positives = 195/271 (71%), Gaps = 4/271 (1%) Query: 13 HISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTFAHF 71 +I L++V L+M+YP+ W A+ K N E+ ++ L+P+ P F +GW + + F H+ Sbjct: 39 YIVLIIVGLLMLYPLLWMFSAAFKPNNEIFTTLGLWPEHPTSDGFINGWKTGTEYNFGHY 98 Query: 72 YLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMF 131 LNTF+ V + ++++ ++VA+ F+R + P + FWF ++ T++LP+ V ++PQY+MF Sbjct: 99 MLNTFKYVIPKVILTIISSTIVAYGFARFEIPWKKFWFTTLITTMLLPSTVLLIPQYIMF 158 Query: 132 SKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRI 191 + G +N+YLP Y+P FA FF+++L+QF+R VP++++EAA+IDGC+ F + W + Sbjct: 159 REMGMLNSYLPLYLPLAFATQ---GFFVFMLIQFLRGVPRDMEEAAQIDGCNSFQVLWYV 215 Query: 192 MLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLA 251 ++P++KPA+++VA++ F+W+ +DF G ++Y+ ++DKY I LALK+ ID PW ++LA Sbjct: 216 VVPILKPAIISVALFQFMWSMNDFIGPLIYVYSVDKYPIALALKMSIDVTEGAPWNEILA 275 Query: 252 MSLVSIVPSVLIFFLAQKHFVEGMSAGALKG 282 M+ +SI+PS+++FFLAQ++FV+G+++ +KG Sbjct: 276 MASISILPSIIVFFLAQRYFVQGVTSSGIKG 306 >ref|NP_384221.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41502.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 295 Score = 252 bits (643), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 120/273 (43%), Positives = 181/273 (66%), Gaps = 5/273 (1%) Query: 10 FVTHISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTF 68 F+ H +L+ S+ M+YP+ W + AS++ +E+ +S +L+P ++++ GW + + +F Sbjct: 26 FLVHAALIAASIAMIYPLLWMISASVRPEDEIFASTSLWPSSVDFSSYVRGWFGL-DVSF 84 Query: 69 AHFYLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQY 128 F+ N+ + + +VVACSL A+AF+RL F RNFWFAIML T+M+P VT++PQY Sbjct: 85 GRFFWNSLVIAVLTVVGNVVACSLAAYAFARLRFAGRNFWFAIMLGTMMIPYHVTLIPQY 144 Query: 129 VMFSKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIY 188 V+F GW+NT+LP +P A FFI+L+VQF R +P+ELDEAA +DGC + IY Sbjct: 145 VLFLDLGWVNTFLPLVVPKFLASD---AFFIFLMVQFFRGIPRELDEAAMMDGCGAWRIY 201 Query: 189 WRIMLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQ 248 W+IMLPL P L T AI+ F+W WDDFFG ++Y+N ++ YTI L L+ F+DS + WG Sbjct: 202 WKIMLPLSLPVLATAAIFSFIWTWDDFFGPLIYLNDMNSYTIQLGLRTFVDSSSTSDWGG 261 Query: 249 MLAMSLVSIVPSVLIFFLAQKHFVEGMSAGALK 281 + AMS +S+VP F Q+ +EG++ +K Sbjct: 262 LFAMSTLSLVPVFFFFLFFQRLLIEGIATTGMK 294 >ref|NP_241985.1| lactose transport system (permease) [Bacillus halodurans] pir||G83789 lactose transport system (permease) BH1119 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04838.1| lactose transport system (permease) [Bacillus halodurans] Length = 281 Score = 251 bits (641), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 114/262 (43%), Positives = 175/262 (66%), Gaps = 5/262 (1%) Query: 22 IMMYPIFWWLGASLKTNEEM--SSANLFPKIPHWANFSDGWVSVPNFTFAHFYLNTFELV 79 IM+YPI W + +SLK E+ +++L P W+N+ DGW F ++ N+F + Sbjct: 23 IMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYPDGWAGFGRTGFDIYFKNSFIIT 82 Query: 80 AGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMFSKWGWINT 139 V+ ++++ S+VA+ F+RL F + FA ++ T+MLP Q+T++PQY++F GW+NT Sbjct: 83 TSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVMLPVQITLIPQYILFHNLGWVNT 142 Query: 140 YLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRIMLPLVKPA 199 + P +P G PFFI+LL+QF+R +P+ELDEAA IDGCS F ++WR++LPL+KPA Sbjct: 143 FYPLIVPAFLGGT---PFFIFLLIQFIRGIPRELDEAAIIDGCSTFGVFWRVILPLLKPA 199 Query: 200 LVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLAMSLVSIVP 259 LVTVAI+ F+W WDDF ++Y+N D T+ L L+ F+D++ WG +LAMS +S++P Sbjct: 200 LVTVAIFAFMWTWDDFLAPLIYLNKTDIQTVALGLRNFMDAESGTSWGALLAMSTLSLLP 259 Query: 260 SVLIFFLAQKHFVEGMSAGALK 281 +IF Q++ VEG+S LK Sbjct: 260 QFIIFLFFQRYLVEGISTTGLK 281 >gb|AAQ87069.1| Oligogalacturonate transport system permease protein OgtB [Rhizobium sp. NGR234] Length = 295 Score = 247 bits (630), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 119/270 (44%), Positives = 175/270 (64%), Gaps = 5/270 (1%) Query: 13 HISLLVVSLIMMYPIFWWLGASLKTNEEM-SSANLFPKIPHWANFSDGWVSVPNFTFAHF 71 H L+ S+ M+YP+ W L AS++ +E+ +S L+P +A++ GW + + +F F Sbjct: 29 HTGLIAASIAMLYPLLWMLSASVRPEDEIFASTTLWPSSVDFASYVRGWFGL-DVSFGRF 87 Query: 72 YLNTFELVAGVLFTSVVACSLVAFAFSRLDFPLRNFWFAIMLVTLMLPTQVTIVPQYVMF 131 N+ + + +V+ACSL A+AF+RL F RNFWFA+ML T+M+P VT++PQYV+F Sbjct: 88 TWNSLVIAVLTVAGNVIACSLAAYAFARLRFAGRNFWFAMMLGTMMIPYHVTLIPQYVLF 147 Query: 132 SKWGWINTYLPFYIPHLFAGGIGGPFFIYLLVQFMRSVPKELDEAAKIDGCSWFSIYWRI 191 GW+NT LP +P A FFI+L+VQF R +P+ELDEAA +DGC + IYW+I Sbjct: 148 LDLGWVNTILPLVVPKFLASD---AFFIFLMVQFFRGIPRELDEAAMMDGCGPWRIYWKI 204 Query: 192 MLPLVKPALVTVAIYCFLWNWDDFFGQMLYINTIDKYTINLALKLFIDSQGSVPWGQMLA 251 MLPL P L T AI+ F+W WDDFFG ++Y+N ++ YTI L L+ F+DS + WG + A Sbjct: 205 MLPLSLPVLATAAIFSFIWTWDDFFGPLIYLNDMNTYTIQLGLRTFVDSSSTSDWGGLFA 264 Query: 252 MSLVSIVPSVLIFFLAQKHFVEGMSAGALK 281 MS +S+VP F Q+ +EG++ +K Sbjct: 265 MSTLSLVPVFFFFLFFQRLLIEGIATTGMK 294 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.142 0.471 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 403,966,338 Number of extensions: 16497089 Number of successful extensions: 60331 Number of sequences better than 1.0e-05: 1480 Number of HSP's gapped: 58415 Number of HSP's successfully gapped: 1481 Length of query: 282 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 158 Effective length of database: 420,565,302 Effective search space: 66449317716 Effective search space used: 66449317716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)