BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0073.0002.p (352 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPOR... 335 1e-90 gb|AAQ87070.1| Oligogalacturonate transport system permease prot... 330 3e-89 ref|NP_241984.1| lactose transport system (permease) [Bacillus h... 325 1e-87 ref|NP_357485.1| AGR_L_3390p [Agrobacterium tumefaciens] >gi|252... 314 2e-84 ref|NP_533613.1| ABC transporter, membrane spanning protein [sug... 313 4e-84 >ref|NP_384222.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] emb|CAC41503.1| PUTATIVE TRANSPORT SYSTEM PERMEASE ABC TRANSPORTER PROTEIN [Sinorhizobium meliloti] Length = 315 Score = 335 bits (858), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 163/317 (51%), Positives = 224/317 (70%), Gaps = 5/317 (1%) Query: 34 MNNAAVKQAPAGSLKTVPSSKKRAKR-WESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYS 92 M + AV S + P+++ R R W S AGY+FL PWLIGFF LTLGP I SLY S Sbjct: 1 MQDTAVAVGTGASSR--PAAQGRLARIWASHGAGYMFLLPWLIGFFGLTLGPAIASLYLS 58 Query: 93 FTDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRK 152 FT++ L+ AP+W G ANY RI T D F +++++T +V+L+VP +L FAL +A+LL+R Sbjct: 59 FTNFDLIRAPEWIGTANYARIATADPKFAAAVKVTFLYVVLSVPFKLAFALLVAILLDRG 118 Query: 153 IKGISFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALG 212 ++G++ YR + Y PSL+G S+A+++LW+ +F+ +G IN LA FGI+GP+WI+ P Y++ Sbjct: 119 VRGLTVYRAIFYLPSLLGGSVAIAVLWRQLFAGDGLINSLLAQFGIEGPSWISHPDYSIW 178 Query: 213 TLILLMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAI 272 TL++L VWQFGS MIIFLAGL+QIP D+YEA+S+DGA KFRQF+ ITLP+L+P+I FNA+ Sbjct: 179 TLVVLSVWQFGSPMIIFLAGLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAV 238 Query: 273 QTMINTFQMFTQAFVITG--GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXX 330 I+ F+ FT AF+I+G GGP+ ST Y +YLY+EAF F MGY Sbjct: 239 VQTIDAFKAFTPAFIISGGTGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGL 298 Query: 331 FTAVLFGTSKYWVFYES 347 FTA F TS+YWV Y+ Sbjct: 299 FTAFSFLTSRYWVHYDD 315 >gb|AAQ87070.1| Oligogalacturonate transport system permease protein OgtA [Rhizobium sp. NGR234] Length = 318 Score = 330 bits (847), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 158/300 (52%), Positives = 215/300 (71%), Gaps = 3/300 (1%) Query: 51 PSSKKR-AKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLAN 109 P+++ R A W AGY+FL PWL+GFF LTLGP + SLY SFT + L+ +P+W G AN Sbjct: 19 PAAQGRFAALWTKHGAGYMFLLPWLVGFFGLTLGPAVASLYLSFTSFDLIRSPEWVGTAN 78 Query: 110 YTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLI 169 Y RI T D F +SL++T +V+L+VP +L FAL +A+LL+R +KG++ YR + Y PSL+ Sbjct: 79 YVRIATADPKFAASLKVTFLYVVLSVPFKLAFALFVAILLDRGVKGLTVYRAIFYLPSLL 138 Query: 170 GTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGTLILLMVWQFGSSMIIF 229 G S+A+++LW+ +F+ +G IN LA FGI+GP+WI+ P Y++ TL++L VWQFGS MIIF Sbjct: 139 GGSVAIAVLWRQLFAGDGLINSLLAQFGIEGPSWISHPDYSIWTLVVLSVWQFGSPMIIF 198 Query: 230 LAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVIT 289 LAGL+QIP D+YEA+S+DGA KFRQF+ ITLP+L+P+I FNA+ I F+ FT AF+I+ Sbjct: 199 LAGLRQIPTDMYEAASLDGASKFRQFYKITLPLLTPVIFFNAVVQTIEAFKAFTPAFIIS 258 Query: 290 G--GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFYES 347 G GGP+ ST Y +YLY+EAF F MGY FTA F TS+YWV Y+ Sbjct: 259 GGTGGPINSTLFYTLYLYQEAFGNFRMGYASALAWILVLIIGLFTAFSFLTSRYWVHYDD 318 >ref|NP_241984.1| lactose transport system (permease) [Bacillus halodurans] pir||F83789 lactose transport system (permease) BH1118 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04837.1| lactose transport system (permease) [Bacillus halodurans] Length = 318 Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 164/319 (51%), Positives = 207/319 (64%), Gaps = 1/319 (0%) Query: 34 MNNAAVKQAPAGSLKTVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSF 93 M +AA A L + ++R K+W+ GY +SPWL+GFF L +GPMI SLY+SF Sbjct: 1 MRDAAKVNREAIELYDSKTRQER-KKWKESFVGYAMISPWLLGFFGLVIGPMIASLYFSF 59 Query: 94 TDYSLLTAPKWTGLANYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKI 153 TDY +L++ W GL NY IFT D F SL++T+ FV + PL+L FAL +AML N Sbjct: 60 TDYDMLSSANWVGLQNYIHIFTSDPRFVQSLKVTLIFVFVPTPLKLAFALFLAMLFNTGR 119 Query: 154 KGISFYRTMVYFPSLIGTSIAVSILWKNIFSRNGFINDFLAIFGIKGPAWIADPKYALGT 213 KG + T+ Y PS+IG S+AV+++WK +F G +N FL +FG G WI YAL Sbjct: 120 KGSGLFSTIYYIPSIIGGSVAVAVVWKQLFGSRGAVNSFLELFGFSGVNWIGSTDYALSI 179 Query: 214 LILLMVWQFGSSMIIFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQ 273 LILL+VWQFGS MIIFLAGL+QIP +LYEA+SVDGA FR+FFSITLPML+P+I FN I Sbjct: 180 LILLVVWQFGSPMIIFLAGLRQIPQELYEAASVDGANSFRKFFSITLPMLTPVIFFNLIM 239 Query: 274 TMINTFQMFTQAFVITGGGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTA 333 I F FTQA++ITGGGP+ ST Y +YLYE AF MGY T Sbjct: 240 QTIGGFMTFTQAYLITGGGPLDSTLFYAVYLYEVAFEYLRMGYASAMAWILLVIIGGITF 299 Query: 334 VLFGTSKYWVFYESQGGKK 352 V F +S YWV YES+GG+ Sbjct: 300 VFFKSSSYWVHYESEGGRS 318 >ref|NP_357485.1| AGR_L_3390p [Agrobacterium tumefaciens] pir||D98343 lactose transport system (permease) (AP001511) [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK90270.1| AGR_L_3390p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 309 Score = 314 bits (805), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 151/302 (50%), Positives = 211/302 (69%), Gaps = 3/302 (0%) Query: 49 TVPSSKKRAKRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLA 108 +P + ++ + YLFL PWLIGFF LTLGP + SLY SFT+Y LL +P W G A Sbjct: 8 ALPKRGGMRRMFDRNIHAYLFLLPWLIGFFGLTLGPALASLYLSFTNYDLLQSPDWVGAA 67 Query: 109 NYTRIFTEDDIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSL 168 NY RI T D F +++++T T+VLL+VPL+L+FAL +A+ NR I+G++ YR + Y PSL Sbjct: 68 NYVRIATADPKFAAAMQVTFTYVLLSVPLKLIFALLVALAFNRGIRGLTLYRAIFYLPSL 127 Query: 169 IGTSIAVSILWKNIFSRNGFINDFL-AIFGIKGPAWIADPKYALGTLILLMVWQFGSSMI 227 +G+S+A+++LW+ +F+ +G +N L FG +GP+WI++P Y++ TL++L VWQFGS MI Sbjct: 128 LGSSVAIAVLWRQLFASDGLVNMILWQAFGYEGPSWISNPDYSIYTLVILSVWQFGSPMI 187 Query: 228 IFLAGLKQIPGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFV 287 IFLAGL+QIP D+YEA+ +DGA K RQFF ITLP+L+P+I FNA+ I+ F+ FT AF+ Sbjct: 188 IFLAGLRQIPQDMYEAAEIDGASKVRQFFRITLPLLTPVIFFNAVIQTIDAFKAFTPAFI 247 Query: 288 ITG--GGPVKSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFY 345 I+ GGP+ ST Y +YLY+EAF F MGY FTA F ++KYWV Y Sbjct: 248 ISEGTGGPINSTLFYTLYLYQEAFGFFRMGYASALAWILVIIISLFTAFSFLSAKYWVHY 307 Query: 346 ES 347 + Sbjct: 308 DD 309 >ref|NP_533613.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AC2939 hypothetical protein Atu3113 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAL43929.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 295 Score = 313 bits (802), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 150/293 (51%), Positives = 209/293 (71%), Gaps = 3/293 (1%) Query: 58 KRWESPLAGYLFLSPWLIGFFLLTLGPMIMSLYYSFTDYSLLTAPKWTGLANYTRIFTED 117 + ++ + YLFL PWLIGFF LTLGP + SLY SFT+Y LL +P W G ANY RI T D Sbjct: 3 RMFDRNIHAYLFLLPWLIGFFGLTLGPALASLYLSFTNYDLLQSPDWVGAANYVRIATAD 62 Query: 118 DIFPSSLRITITFVLLTVPLRLMFALGIAMLLNRKIKGISFYRTMVYFPSLIGTSIAVSI 177 F +++++T T+VLL+VPL+L+FAL +A+ NR I+G++ YR + Y PSL+G+S+A+++ Sbjct: 63 PKFAAAMQVTFTYVLLSVPLKLIFALLVALAFNRGIRGLTLYRAIFYLPSLLGSSVAIAV 122 Query: 178 LWKNIFSRNGFINDFL-AIFGIKGPAWIADPKYALGTLILLMVWQFGSSMIIFLAGLKQI 236 LW+ +F+ +G +N L FG +GP+WI++P Y++ TL++L VWQFGS MIIFLAGL+QI Sbjct: 123 LWRQLFASDGLVNMILWQAFGYEGPSWISNPDYSIYTLVILSVWQFGSPMIIFLAGLRQI 182 Query: 237 PGDLYEASSVDGAGKFRQFFSITLPMLSPIIMFNAIQTMINTFQMFTQAFVITG--GGPV 294 P D+YEA+ +DGA K RQFF ITLP+L+P+I FNA+ I+ F+ FT AF+I+ GGP+ Sbjct: 183 PQDMYEAAEIDGASKVRQFFRITLPLLTPVIFFNAVIQTIDAFKAFTPAFIISEGTGGPI 242 Query: 295 KSTFVYVMYLYEEAFTKFHMGYXXXXXXXXXXXXXXFTAVLFGTSKYWVFYES 347 ST Y +YLY+EAF F MGY FTA F ++KYWV Y+ Sbjct: 243 NSTLFYTLYLYQEAFGFFRMGYASALAWILVIIISLFTAFSFLSAKYWVHYDD 295 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.328 0.141 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 502,458,418 Number of extensions: 19638341 Number of successful extensions: 63224 Number of sequences better than 1.0e-05: 1343 Number of HSP's gapped: 61574 Number of HSP's successfully gapped: 1347 Length of query: 352 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 226 Effective length of database: 415,135,104 Effective search space: 93820533504 Effective search space used: 93820533504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)