BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0008.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00030361.1| COG0386: Glutathione peroxidase [Burkholderia... 197 8e-50 gb|EAH87808.1| unknown [environmental sequence] 192 2e-48 gb|EAJ62626.1| unknown [environmental sequence] 192 2e-48 ref|NP_773372.1| bll6732 [Bradyrhizobium japonicum] >gi|27355012... 190 8e-48 ref|NP_267520.2| glutathione peroxidase [Lactococcus lactis subs... 187 6e-47 >ref|ZP_00030361.1| COG0386: Glutathione peroxidase [Burkholderia fungorum] Length = 159 Score = 197 bits (500), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 95/157 (60%), Positives = 110/157 (70%) Query: 2 SIYSFAGVKPSGAEVPFKDYEGKVLLIANTASKCGLTPQYGDLQKLYEQYGDKGLVVLGF 61 SIYSF+ G EV + Y GKVLLI NTAS+CG TPQY LQKLYE Y +GL VLGF Sbjct: 3 SIYSFSARTLGGEEVSLEQYSGKVLLIVNTASECGFTPQYAGLQKLYETYAARGLAVLGF 62 Query: 62 PCNQFAGQEPGTSEEAEEFCQINYGVTFPIFAKVDVNGPDASLLFQYLKGQQPGEGGSSD 121 PCNQF QEPG + + FC+ NYGVTFP+F KVDVNG +A LF+YL G+ PG G Sbjct: 63 PCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFDKVDVNGANAHPLFRYLTGEAPGVLGLEA 122 Query: 122 IQWNFTKFLVDRSGNVVARVEPKESPESMKEQIEALL 158 I+WNFTKFL+DR GNVV R P PE++ E IE LL Sbjct: 123 IKWNFTKFLIDREGNVVKRYAPLTKPEAITEDIEKLL 159 >gb|EAH87808.1| unknown [environmental sequence] Length = 162 Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 116/157 (73%) Query: 2 SIYSFAGVKPSGAEVPFKDYEGKVLLIANTASKCGLTPQYGDLQKLYEQYGDKGLVVLGF 61 SIY F ++ +G VP Y GKVLLI NTAS CG TPQ+G L++L+++Y D+GLVVLGF Sbjct: 4 SIYDFEALQMNGQAVPLSQYRGKVLLIVNTASACGFTPQFGGLEELHKEYADQGLVVLGF 63 Query: 62 PCNQFAGQEPGTSEEAEEFCQINYGVTFPIFAKVDVNGPDASLLFQYLKGQQPGEGGSSD 121 PCNQF Q+PG+++E FCQ+NYGV+FP+ AK+DVNG +AS L+Q+L + PG GS Sbjct: 64 PCNQFGAQDPGSNDEIASFCQLNYGVSFPMMAKIDVNGANASPLYQWLTAEAPGLLGSKA 123 Query: 122 IQWNFTKFLVDRSGNVVARVEPKESPESMKEQIEALL 158 I+WNFTKFLV + G V+ R P+++P+ + IEA L Sbjct: 124 IKWNFTKFLVGKDGQVIRRYAPQDAPKKLAGDIEAAL 160 >gb|EAJ62626.1| unknown [environmental sequence] Length = 159 Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 92/157 (58%), Positives = 110/157 (70%) Query: 2 SIYSFAGVKPSGAEVPFKDYEGKVLLIANTASKCGLTPQYGDLQKLYEQYGDKGLVVLGF 61 SIYSF+ G EV + Y+GKVLLI NTAS+CG TPQY LQKLY+ Y +GL VLGF Sbjct: 3 SIYSFSARTLGGEEVSLERYQGKVLLIVNTASECGFTPQYAGLQKLYDTYAARGLAVLGF 62 Query: 62 PCNQFAGQEPGTSEEAEEFCQINYGVTFPIFAKVDVNGPDASLLFQYLKGQQPGEGGSSD 121 PCNQF QEPG + + FC+ NYGVTFP+F K+DVNG +A LF+YL G+ PG G Sbjct: 63 PCNQFGKQEPGDAAQIGSFCEKNYGVTFPMFEKIDVNGANAHPLFRYLTGEAPGLLGLEA 122 Query: 122 IQWNFTKFLVDRSGNVVARVEPKESPESMKEQIEALL 158 I+WNFTKFL+ R GNVV R P PE++ E IE LL Sbjct: 123 IKWNFTKFLIGRDGNVVKRYAPLTKPEAIVEDIEKLL 159 >ref|NP_773372.1| bll6732 [Bradyrhizobium japonicum] dbj|BAC51997.1| bll6732 [Bradyrhizobium japonicum USDA 110] Length = 158 Score = 190 bits (483), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 90/157 (57%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 2 SIYSFAGVKPSGAEVPFKDYEGKVLLIANTASKCGLTPQYGDLQKLYEQYGDKGLVVLGF 61 +IY F G EVP + +EG+VLLI NTASKCG TPQY L+ LY +G VLGF Sbjct: 3 AIYDFKANSLLGEEVPMRRFEGQVLLIVNTASKCGFTPQYRGLEDLYRDLSPRGFAVLGF 62 Query: 62 PCNQFAGQEPGTSEEAEEFCQINYGVTFPIFAKVDVNGPDASLLFQYLKGQQPGEGGSSD 121 PCNQF QEPG + E +EFC NY VTFP+F K+DVNG +A L++YLK QQ G G+S Sbjct: 63 PCNQFGAQEPGQASEIQEFCSTNYDVTFPLFEKIDVNGANAHPLYEYLKRQQSGLLGAS- 121 Query: 122 IQWNFTKFLVDRSGNVVARVEPKESPESMKEQIEALL 158 I+WNFTKFLVDR+G V+AR P PE +++QIE LL Sbjct: 122 IKWNFTKFLVDRAGRVIARYAPTARPEGLRQQIETLL 158 >ref|NP_267520.2| glutathione peroxidase [Lactococcus lactis subsp. lactis] sp|Q9CFV1|GPO_LACLA Glutathione peroxidase Length = 157 Score = 187 bits (475), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%) Query: 1 MSIYSFAGVKPSGAEVPFKDYEGKVLLIANTASKCGLTPQYGDLQKLYEQYGDKGLVVLG 60 M+ Y F+ K +G V D++GKV+++ NTASKCG TPQ+ L+KLYE Y D+GL +LG Sbjct: 1 MNFYDFSAFKMNGETVSMSDFKGKVVIVVNTASKCGFTPQFEGLEKLYENYKDQGLEILG 60 Query: 61 FPCNQFAGQEPGTSEEAEEFCQINYGVTFPIFAKVDVNGPDASLLFQYLKGQQPGEGGSS 120 FPCNQF Q+ G + E EFCQ+NYGVTFP+F K+ VNG +A L+Q+LK + G S Sbjct: 61 FPCNQFVNQDAGENSEINEFCQLNYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKG-ALSG 119 Query: 121 DIQWNFTKFLVDRSGNVVARVEPKESPESMKEQIEALL 158 I+WNFTKFL+DR GNV+ R PK P+ M+E+I+ LL Sbjct: 120 TIKWNFTKFLIDREGNVIERFAPKTEPKEMEEEIQKLL 157 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 251,350,157 Number of extensions: 10474192 Number of successful extensions: 16359 Number of sequences better than 1.0e-05: 799 Number of HSP's gapped: 15438 Number of HSP's successfully gapped: 801 Length of query: 158 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 43 Effective length of database: 445,001,193 Effective search space: 19135051299 Effective search space used: 19135051299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)