BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0002.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471579.1| similar to unknown protein [Listeria innocua] >... 147 1e-34 ref|NP_465665.1| similar to unknown protein [Listeria monocytoge... 142 3e-33 ref|NP_814039.1| acetyltransferase, GNAT family [Enterococcus fa... 101 9e-21 ref|NP_722347.1| putative acetyltransferase [Streptococcus mutan... 90 2e-17 ref|NP_827191.1| putative acetyltransferase [Streptomyces avermi... 84 2e-15 >ref|NP_471579.1| similar to unknown protein [Listeria innocua] pir||AC1713 hypothetical protein homolog lin2246 [imported] - Listeria innocua (strain Clip11262) emb|CAC97475.1| lin2246 [Listeria innocua] Length = 157 Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 105/157 (66%) Query: 16 LTIRPSEIRDVRELIVLDNMIWTEDTSPGPLMWRSREDYLMHAPPGSQLVALKDGELCGY 75 + IR S+ +D +I L++++WT T+PG + + S ++L+ PPGS++V KD ++ G Sbjct: 1 MQIRLSKRKDSASMIELEHLVWTPGTTPGDVHFDSEAEFLLKNPPGSKIVVEKDEKIIGI 60 Query: 76 VGFGCPSGMESNRHVCEVNIAVHPKFQRMGIGGQLIEAIKSHAAENRIRKLRLRVLSCNE 135 +G+ P + SN+HV E++IAVHP +QR GIG L++ +K A E K+ LRVLS N+ Sbjct: 61 LGYKSPIPLPSNKHVVEIDIAVHPDYQREGIGQLLMDKMKEVAREKGFIKISLRVLSINQ 120 Query: 136 PALAFYRKCGFVEEGRLREEFFLGGRYVDEVFMSCML 172 A+ FY K GF +EGRL +EF + G+YVD++ M+ L Sbjct: 121 KAIRFYEKNGFKQEGRLEKEFIIQGKYVDDILMAYFL 157 >ref|NP_465665.1| similar to unknown protein [Listeria monocytogenes EGD-e] pir||AE1342 hypothetical protein lmo2141 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00219.1| lmo2141 [Listeria monocytogenes] Length = 157 Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 103/157 (65%) Query: 16 LTIRPSEIRDVRELIVLDNMIWTEDTSPGPLMWRSREDYLMHAPPGSQLVALKDGELCGY 75 + IR S+ D +I L++++WT T+PG + + S ++L+ +PPGS++V + D ++ G Sbjct: 1 MQIRLSKREDAASMIELEHLVWTPGTTPGDIHFDSEAEFLLKSPPGSKIVVVTDDKVVGI 60 Query: 76 VGFGCPSGMESNRHVCEVNIAVHPKFQRMGIGGQLIEAIKSHAAENRIRKLRLRVLSCNE 135 +G+ P + SN+HV E++IAVHP +QR GIG L++ +K A E K+ LRVLS N+ Sbjct: 61 LGYKSPIPLASNKHVAEIDIAVHPDYQRAGIGQLLMDKMKEVAREKGYIKIALRVLSINQ 120 Query: 136 PALAFYRKCGFVEEGRLREEFFLGGRYVDEVFMSCML 172 A+ FY K GF +EG L +EF + G +VD++ M+ L Sbjct: 121 KAIRFYEKNGFKQEGLLEKEFIIQGEFVDDILMAYFL 157 >ref|NP_814039.1| acetyltransferase, GNAT family [Enterococcus faecalis V583] gb|AAO80110.1| acetyltransferase, GNAT family [Enterococcus faecalis V583] Length = 163 Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/151 (35%), Positives = 81/151 (53%) Query: 15 ALTIRPSEIRDVRELIVLDNMIWTEDTSPGPLMWRSREDYLMHAPPGSQLVALKDGELCG 74 +LTIR D L LD +IWT+ +P + S Y + VA+ +L G Sbjct: 4 SLTIRLVAEADWPALHALDQIIWTKKNTPAEIQPLSLAAYQEKMKDETIFVAISGQQLAG 63 Query: 75 YVGFGCPSGMESNRHVCEVNIAVHPKFQRMGIGGQLIEAIKSHAAENRIRKLRLRVLSCN 134 ++ P+ + +++ ++I V P FQ GIGG L+ IK A + I KL LRV++ N Sbjct: 64 FIEVHPPTSLAAHQKQWLLSIGVSPDFQDQGIGGSLLSYIKDMAEISGIHKLSLRVMATN 123 Query: 135 EPALAFYRKCGFVEEGRLREEFFLGGRYVDE 165 + A+ FY K GFV+E +EEF++ G Y D+ Sbjct: 124 QEAIRFYEKHGFVQEAHFKEEFYINGHYCDD 154 >ref|NP_722347.1| putative acetyltransferase [Streptococcus mutans UA159] gb|AAN59653.1| putative acetyltransferase [Streptococcus mutans UA159] Length = 163 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 2/161 (1%) Query: 16 LTIRPSEIRDVRELIVLDNMIWTEDTSPGPLMWRSREDYLMHAPPGSQ-LVALKDGELCG 74 + I P + D+ +++ L+N W+E +P PL S++ + + LVA ++ G Sbjct: 1 MKISPMLLSDIEQVVELENKTWSEQNTPVPLPVASKDQIIQKFESNTHFLVAKIKDKIVG 60 Query: 75 YVGFGCPSGMESNRHVCEVNIAVHPKFQRMGIGGQLIEAIKSHAAENRIRKLRLRVLSCN 134 + + S +H+ IAV K +R GIG L++ I + ++ +K+ + VLS N Sbjct: 61 VLDYSSLYPFPSGQHIVTFGIAVAEKERRKGIGRALVQ-IFLNEVKSDYQKVLIHVLSSN 119 Query: 135 EPALAFYRKCGFVEEGRLREEFFLGGRYVDEVFMSCMLTGG 175 + A+ FY+K GF E RL ++FFL G+YVD++ S L Sbjct: 120 QEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYSYDLEAA 160 >ref|NP_827191.1| putative acetyltransferase [Streptomyces avermitilis MA-4680] dbj|BAC73726.1| putative acetyltransferase [Streptomyces avermitilis MA-4680] Length = 172 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 63/114 (55%), Gaps = 1/114 (0%) Query: 60 PGSQLVALKDGELCGYVGFGCPSGMESNRHVCEVN-IAVHPKFQRMGIGGQLIEAIKSHA 118 P LVA G L GY+ G P+ + +N HV ++ + V + + G+G L+ A++ HA Sbjct: 52 PRDHLVAELGGRLAGYIRLGYPTPLAANSHVRQIQGLVVAEEARGAGVGRALLRAVQEHA 111 Query: 119 AENRIRKLRLRVLSCNEPALAFYRKCGFVEEGRLREEFFLGGRYVDEVFMSCML 172 A R++ LRVL N PA Y GF EG L EEF L G+YVD+V M L Sbjct: 112 ARQGARRISLRVLGHNTPARKLYESEGFEVEGILPEEFLLDGQYVDDVLMGRAL 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,618,792 Number of extensions: 11826907 Number of successful extensions: 24159 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 24297 Number of HSP's successfully gapped: 85 Length of query: 183 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 65 Effective length of database: 436,855,896 Effective search space: 28395633240 Effective search space used: 28395633240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)