BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0001.p (214 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388646.1| similar to hypothetical proteins [Bacillus subt... 206 2e-52 ref|NP_978780.1| conserved hypothetical protein [Bacillus cereus... 184 8e-46 ref|NP_832130.1| hypothetical Cytosolic Protein [Bacillus cereus... 182 3e-45 ref|NP_656296.1| hypothetical protein predicted by GeneMark [Bac... 179 5e-44 ref|NP_241482.1| BH0616~unknown conserved protein [Bacillus halo... 177 1e-43 >ref|NP_388646.1| similar to hypothetical proteins [Bacillus subtilis] pir||A69811 conserved hypothetical protein yflK - Bacillus subtilis dbj|BAA22304.1| YflK [Bacillus subtilis] emb|CAB12594.1| yflK [Bacillus subtilis subsp. subtilis str. 168] Length = 221 Score = 206 bits (525), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 129/185 (69%) Query: 3 VISLNVGKPKTVDYRGKPLETGIYKMPAPGKVQLHLEGFDGDGQADLVNHGGADKAVCVY 62 V+SLN+GKP+T++Y GK +ETGI K PA V L+ E F+GDGQADLVNHGG DKAVCVY Sbjct: 8 VLSLNLGKPQTLEYDGKKIETGIMKRPAKSAVMLYRENFEGDGQADLVNHGGPDKAVCVY 67 Query: 63 PIEHYPFWEQWLGKKLEYSAFGENITANGLLETEVCIGDVYEVGTTLLQVSQPRFPCFKL 122 P EHYPFWE++L + L +AFGEN+T GL E VCIGDV+ + ++QVSQPR PC KL Sbjct: 68 PAEHYPFWEEFLSRPLSNAAFGENLTVAGLTEENVCIGDVFRLDEAVVQVSQPRQPCVKL 127 Query: 123 AQKHGPADMPAQVLKTGYSGFYFRVLREGQIAAGDPIIKQESGKGSFPIKQVLYLMEHGR 182 A+K G +M +V +TGY+GFYFRVL EG+++ G + G+ ++ + H Sbjct: 128 AKKFGVKEMVLKVQQTGYTGFYFRVLEEGRVSPGANLELLSRGEKGISVQFANRINYHDA 187 Query: 183 KDQTG 187 K+ T Sbjct: 188 KNLTA 192 >ref|NP_978780.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41388.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 228 Score = 184 bits (468), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 91/206 (44%), Positives = 128/206 (62%) Query: 1 MEVISLNVGKPKTVDYRGKPLETGIYKMPAPGKVQLHLEGFDGDGQADLVNHGGADKAVC 60 +++SLN+G PK V Y GK + TGI K V L F+GDGQADLV+HGG DKAVC Sbjct: 5 FQLLSLNIGLPKEVTYGGKVIHTGINKKQVKEPVYLSFVKFNGDGQADLVHHGGVDKAVC 64 Query: 61 VYPIEHYPFWEQWLGKKLEYSAFGENITANGLLETEVCIGDVYEVGTTLLQVSQPRFPCF 120 VY +HYP+WE+ L + L Y AFGENIT +G+ E +VCIGD +E+G ++QV+QPR PCF Sbjct: 65 VYTGDHYPYWEKELNQNLVYGAFGENITVSGMREEDVCIGDTFELGQAIVQVTQPRQPCF 124 Query: 121 KLAQKHGPADMPAQVLKTGYSGFYFRVLREGQIAAGDPIIKQESGKGSFPIKQVLYLMEH 180 KLA+K+ +P +TGY+GFYFRVL+EG +++ D + + +S I +M Sbjct: 125 KLAKKYNIPKLPLYFQETGYTGFYFRVLKEGWVSSVDTLKRLQSDPKGVSIAFANCIMHK 184 Query: 181 GRKDQTGXXXXXXXXXXXXDTREKFQ 206 +++ G R+ F+ Sbjct: 185 EKQNIEGVKRILEVNALSSSWRKSFE 210 >ref|NP_832130.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP09331.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 229 Score = 182 bits (463), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/163 (52%), Positives = 116/163 (71%) Query: 2 EVISLNVGKPKTVDYRGKPLETGIYKMPAPGKVQLHLEGFDGDGQADLVNHGGADKAVCV 61 +++SLN+G PK V Y GK + TGI K V L F+GDGQADLV+HGG DKAVCV Sbjct: 6 QLLSLNIGLPKEVTYGGKVIHTGINKKQVKEPVYLSFVKFNGDGQADLVHHGGVDKAVCV 65 Query: 62 YPIEHYPFWEQWLGKKLEYSAFGENITANGLLETEVCIGDVYEVGTTLLQVSQPRFPCFK 121 Y +HYP+WE+ L + Y AFGENIT +G+ E +VCIGD +E+G ++QV+QPR PCFK Sbjct: 66 YTGDHYPYWEKELNQDFVYGAFGENITVSGMREEDVCIGDTFELGQAIVQVTQPRQPCFK 125 Query: 122 LAQKHGPADMPAQVLKTGYSGFYFRVLREGQIAAGDPIIKQES 164 LA+K+ +P +TGY+GFYFRVL+EG +++ D + K +S Sbjct: 126 LAKKYNIPKLPLYFQETGYTGFYFRVLKEGWVSSVDTLKKLQS 168 >ref|NP_656296.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844816.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP26302.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 228 Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 112/158 (70%) Query: 2 EVISLNVGKPKTVDYRGKPLETGIYKMPAPGKVQLHLEGFDGDGQADLVNHGGADKAVCV 61 +++SLN+G PK V Y GK + TGI K V L F+GDGQADLV+HGG DKAVCV Sbjct: 6 QLLSLNIGLPKEVTYGGKVIHTGINKKQVKEPVFLSFVKFNGDGQADLVHHGGVDKAVCV 65 Query: 62 YPIEHYPFWEQWLGKKLEYSAFGENITANGLLETEVCIGDVYEVGTTLLQVSQPRFPCFK 121 Y EHY +WE+ L + L Y AFGENIT +G+ E +VCIGD +++G ++QV+QPR PCFK Sbjct: 66 YSGEHYGYWEKELNQVLVYGAFGENITISGMCEEDVCIGDTFQIGEAIVQVTQPRQPCFK 125 Query: 122 LAQKHGPADMPAQVLKTGYSGFYFRVLREGQIAAGDPI 159 LA+K+ +P +TGY+GFYFRVL+EG ++ D + Sbjct: 126 LAKKYNIPKLPLYFQETGYTGFYFRVLKEGWVSPADTL 163 >ref|NP_241482.1| BH0616~unknown conserved protein [Bacillus halodurans] pir||H83726 hypothetical protein BH0616 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04335.1| BH0616~unknown conserved protein [Bacillus halodurans] Length = 214 Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/153 (54%), Positives = 104/153 (67%) Query: 5 SLNVGKPKTVDYRGKPLETGIYKMPAPGKVQLHLEGFDGDGQADLVNHGGADKAVCVYPI 64 S+ VG PKTVDY+GK + T I+K P G V+L G +GD QADL+NHGG DKAVCVYP+ Sbjct: 7 SIQVGLPKTVDYKGKEVTTSIFKEPVTGPVKLMKTGVEGDQQADLINHGGVDKAVCVYPL 66 Query: 65 EHYPFWEQWLGKKLEYSAFGENITANGLLETEVCIGDVYEVGTTLLQVSQPRFPCFKLAQ 124 +HY +W LG L +AFGEN+T L E + IGD + VG L+QVSQPR PCFKL Sbjct: 67 DHYSYWGDKLGGSLGPAAFGENLTVIALTEEQAHIGDTFRVGEALVQVSQPRMPCFKLNV 126 Query: 125 KHGPADMPAQVLKTGYSGFYFRVLREGQIAAGD 157 KHG P + +TG+SG+Y RVL EG + GD Sbjct: 127 KHGVTKFPLWIQETGWSGYYLRVLEEGNVRVGD 159 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.140 0.433 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 332,079,202 Number of extensions: 13974127 Number of successful extensions: 21257 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 21178 Number of HSP's successfully gapped: 88 Length of query: 214 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 94 Effective length of database: 431,425,698 Effective search space: 40554015612 Effective search space used: 40554015612 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)