BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0014.p (209 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||T48896 uracil phosphoribosyltransferase (EC 2.4.2.9) upp [v... 309 2e-83 sp|P70881|UPP_BACCL Uracil phosphoribosyltransferase (UMP pyroph... 309 3e-83 ref|NP_653771.1| Pribosyltran, Phosphoribosyl transferase domain... 309 3e-83 ref|NP_244631.1| uracil phosphoribosyltransferase [Bacillus halo... 308 4e-83 ref|NP_391570.1| uracil phosphoribosyltransferase [Bacillus subt... 301 6e-81 >pir||T48896 uracil phosphoribosyltransferase (EC 2.4.2.9) upp [validated] - Bacillus caldolyticus pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil Phosphoribosyltransferase With Bound Ump pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil Phosphoribosyltransferase With Bound Ump emb|CAA67884.1| uracil phosphoribosyltransferase [Bacillus caldolyticus] Length = 209 Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 142/209 (67%), Positives = 178/209 (85%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 MGK+ + DHPLIQHKLT+IRD T TKEFRE VDEVATLMA+EITRD+PLE + ++TPV+ Sbjct: 1 MGKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVS 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 + ++KVI+G+ LG+IPILRAG+GM++G+LKL+PAAKVGH+GL+RDP+TL+PVEYY+KLP+ Sbjct: 61 KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPS 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 DV+ER+ I++DPMLATGGSA+AAI +LK RG IK M LI HPDVDIY Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVETAHPDVDIY 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 +AALD+ LN+HGYIVPGLGDAGDRL+GTK Sbjct: 181 IAALDERLNDHGYIVPGLGDAGDRLFGTK 209 >sp|P70881|UPP_BACCL Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) Length = 209 Score = 309 bits (792), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 142/209 (67%), Positives = 178/209 (85%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 MGK+ + DHPLIQHKLT+IRD T TKEFRE VDEVATLMA+EITRD+PLE + ++TPV+ Sbjct: 1 MGKVYVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVS 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 + ++KVI+G+ LG+IPILRAG+GM++G+LKL+PAAKVGH+GL+RDP+TL+PVEYY+KLP+ Sbjct: 61 KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPS 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 DV+ER+ I++DPMLATGGSA+AAI +LK RG IK M LI HPDVDIY Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPGRVKAVETAHPDVDIY 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 +AALD+ LN+HGYIVPGLGDAGDRL+GTK Sbjct: 181 IAALDERLNDHGYIVPGLGDAGDRLFGTK 209 >ref|NP_653771.1| Pribosyltran, Phosphoribosyl transferase domain [Bacillus anthracis A2012] ref|NP_834977.1| Uracil phosphoribosyltransferase [Bacillus cereus ATCC 14579] ref|NP_847715.1| uracil phosphoribosyltransferase [Bacillus anthracis str. Ames] ref|NP_981732.1| uracil phosphoribosyltransferase [Bacillus cereus ATCC 10987] gb|AAP12178.1| Uracil phosphoribosyltransferase [Bacillus cereus ATCC 14579] gb|AAP29201.1| uracil phosphoribosyltransferase [Bacillus anthracis str. Ames] gb|AAS44340.1| uracil phosphoribosyltransferase [Bacillus cereus ATCC 10987] Length = 209 Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 145/209 (69%), Positives = 177/209 (84%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 MGKL + DHPLIQHK+T+IRD T TK+FRE VDEVA+LMA+EITRD+PL+ I ++TPV+ Sbjct: 1 MGKLYVFDHPLIQHKITYIRDKNTGTKDFRELVDEVASLMAFEITRDLPLKDIEIETPVS 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 + +KVI+G+ LGLIPILRAGLGM++G+LKL+PAAKVGHVGL+RDP+TLQPVEYY+KLPT Sbjct: 61 KATTKVIAGKKLGLIPILRAGLGMVDGILKLIPAAKVGHVGLYRDPKTLQPVEYYVKLPT 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 DV+ER+ IV+DPMLATGGSA AI SLK RG QIK+M ++ HPDVDIY Sbjct: 121 DVEERDFIVLDPMLATGGSAAEAINSLKKRGAKQIKLMCIVAAPEGVKVVQEEHPDVDIY 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 VAALD+ LN+HGY+VPGLGDAGDRL+GTK Sbjct: 181 VAALDEKLNDHGYVVPGLGDAGDRLFGTK 209 >ref|NP_244631.1| uracil phosphoribosyltransferase [Bacillus halodurans] sp|Q9K6G5|UPP_BACHD Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) pir||D84120 uracil phosphoribosyltransferase upp [imported] - Bacillus halodurans (strain C-125) dbj|BAB07483.1| uracil phosphoribosyltransferase [Bacillus halodurans] Length = 209 Score = 308 bits (790), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 148/209 (70%), Positives = 173/209 (82%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 M K+ + DHPLIQHKLT+IRD T TKEFRE VDEVA LMA+EITRD+PL+ +TV+TPV Sbjct: 1 MSKVYVFDHPLIQHKLTYIRDKSTGTKEFRELVDEVAALMAFEITRDLPLQEVTVETPVG 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 SK I+G+ LGL+PILRAGLGM++G+L+++PAAKVGHVGL+RDPETLQPVEYY+KLPT Sbjct: 61 PATSKKIAGKKLGLVPILRAGLGMVDGILRMIPAAKVGHVGLYRDPETLQPVEYYVKLPT 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 DV+ERELIVIDPMLATGGSA+ AI LK RG T IK+M LI HPDVDIY Sbjct: 121 DVEERELIVIDPMLATGGSAVEAINCLKKRGATSIKLMCLIAAPEGVEVVKEAHPDVDIY 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 +AALD+ LNE GYIVPGLGDAGDRL+GTK Sbjct: 181 LAALDEKLNEKGYIVPGLGDAGDRLFGTK 209 >ref|NP_391570.1| uracil phosphoribosyltransferase [Bacillus subtilis] sp|P39149|UPP_BACSU Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) pir||I40484 uracil phosphoribosyltransferase (EC 2.4.2.9) upp - Bacillus subtilis emb|CAA86111.1| uracil phosphoribosyltransferase [Bacillus subtilis] emb|CAB15706.1| uracil phosphoribosyltransferase [Bacillus subtilis subsp. subtilis str. 168] prf||2108403K uracil phosphoribosyltransferase Length = 209 Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 142/209 (67%), Positives = 172/209 (82%) Query: 1 MGKLVICDHPLIQHKLTFIRDVRTNTKEFREHVDEVATLMAYEITRDIPLETITVQTPVA 60 MGK+ + DHPLIQHKLT+IR+ T TK+FRE VDEVATLMA+EITRD+PLE + + TPV Sbjct: 1 MGKVYVFDHPLIQHKLTYIRNENTGTKDFRELVDEVATLMAFEITRDLPLEEVDINTPVQ 60 Query: 61 ETQSKVISGRMLGLIPILRAGLGMLEGVLKLLPAAKVGHVGLFRDPETLQPVEYYIKLPT 120 +SKVISG+ LG++PILRAGLGM++G+LKL+PAAKVGHVGL+RDPETL+PVEYY+KLP+ Sbjct: 61 AAKSKVISGKKLGVVPILRAGLGMVDGILKLIPAAKVGHVGLYRDPETLKPVEYYVKLPS 120 Query: 121 DVQERELIVIDPMLATGGSAIAAITSLKNRGCTQIKMMNLIXXXXXXXXXXXXHPDVDIY 180 DV+ERE IV+DPMLATGGSA+ AI SLK RG I+ M L+ H DVDIY Sbjct: 121 DVEEREFIVVDPMLATGGSAVEAIHSLKKRGAKNIRFMCLVAAPEGVEELQKHHSDVDIY 180 Query: 181 VAALDDHLNEHGYIVPGLGDAGDRLYGTK 209 +AALD+ LNE GYIVPGLGDAGDR++GTK Sbjct: 181 IAALDEKLNEKGYIVPGLGDAGDRMFGTK 209 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 283,506,261 Number of extensions: 10201443 Number of successful extensions: 25844 Number of sequences better than 1.0e-05: 316 Number of HSP's gapped: 25534 Number of HSP's successfully gapped: 317 Length of query: 209 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 89 Effective length of database: 431,425,698 Effective search space: 38396887122 Effective search space used: 38396887122 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)