BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0009.p
         (75 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||I39786 H+-transporting two-sector ATPase (EC 3.6.3.14) C ch...    73   2e-12
ref|NP_466057.1| highly similar to H+-transporting ATP synthase ...    71   7e-12
ref|NP_472007.1| highly similar to H+-transporting ATP synthase ...    70   1e-11
sp|P00845|ATPL_BACP3 ATP synthase C chain (Lipid-binding protein...    70   2e-11
sp|P42011|ATPL_BACST ATP synthase C chain (Lipid-binding protein...    70   2e-11

>pir||I39786 H+-transporting two-sector ATPase (EC 3.6.3.14) C chain -
          Bacillus firmus
 gb|AAA22257.1| ATP synthase c subunit
          Length = 70

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/45 (80%), Positives = 40/45 (88%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFMFYVG 73
          SKTVEG+ARQPEA+  LQTTMFIGVALVEA+PIIGVV+AFM   G
Sbjct: 26 SKTVEGMARQPEARGMLQTTMFIGVALVEAVPIIGVVIAFMVIGG 70


>ref|NP_466057.1| highly similar to H+-transporting ATP synthase chain c [Listeria
          monocytogenes EGD-e]
 pir||AF1391 H+-transporting ATP synthase chain c homolog atpE [imported] -
          Listeria monocytogenes (strain EGD-e)
 emb|CAD00612.1| atpE [Listeria monocytogenes]
          Length = 72

 Score = 71.2 bits (173), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 38/41 (92%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          SKTVEG+ARQPEA+S LQ+ MF+GVALVEALPII VV+AFM
Sbjct: 28 SKTVEGVARQPEARSMLQSIMFVGVALVEALPIIAVVIAFM 68


>ref|NP_472007.1| highly similar to H+-transporting ATP synthase chain c [Listeria
          innocua]
 pir||AH1766 H+-transporting ATP synthase chain c homolog atpE [imported] -
          Listeria innocua (strain Clip11262)
 emb|CAC97904.1| atpE [Listeria innocua]
          Length = 72

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/41 (80%), Positives = 37/41 (90%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFM 69
          SKTVEG+ARQPEA+S LQT MFIG+ LVEALPII VV+AFM
Sbjct: 28 SKTVEGVARQPEARSMLQTIMFIGIGLVEALPIIAVVIAFM 68


>sp|P00845|ATPL_BACP3 ATP synthase C chain (Lipid-binding protein)
 pir||LWHWA3 H+-transporting two-sector ATPase (EC 3.6.3.14) lipid-binding
          protein - thermophilic bacterium PS-3
 emb|CAA30649.1| unnamed protein product [thermophilic bacterium PS3]
          Length = 72

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFMF 70
          S+T+EGIARQPE +  LQTTMFIGVALVEALPIIGVV +F++
Sbjct: 28 SRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIY 69


>sp|P42011|ATPL_BACST ATP synthase C chain (Lipid-binding protein)
 dbj|BAA07251.1| ATPase subunit c [Geobacillus stearothermophilus]
          Length = 72

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/42 (76%), Positives = 38/42 (90%)

Query: 29 SKTVEGIARQPEAKSTLQTTMFIGVALVEALPIIGVVLAFMF 70
          S+T+EGIARQPE +  LQTTMFIGVALVEALPIIGVV +F++
Sbjct: 28 SRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIY 69


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.136    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 54,847,198
Number of extensions: 1180385
Number of successful extensions: 5348
Number of sequences better than 1.0e-05: 28
Number of HSP's gapped: 5349
Number of HSP's successfully gapped: 28
Length of query: 75
Length of database: 757,237,578
Length adjustment: 45
Effective length of query: 30
Effective length of database: 635,058,123
Effective search space: 19051743690
Effective search space used: 19051743690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)