BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0006.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ10088.1| ATP synthase subunit alpha [Bacillus sp. TA2.A1] 811 0.0 ref|NP_834970.1| ATP synthase alpha chain [Bacillus cereus ATCC ... 783 0.0 ref|NP_653764.1| ATP-synt_ab, ATP synthase alpha/beta family, nu... 782 0.0 sp|P42005|ATPA_BACST ATP synthase alpha chain >gi|534852|dbj|BAA... 781 0.0 ref|NP_391564.1| ATP synthase (subunit alpha) [Bacillus subtilis... 779 0.0 >gb|AAQ10088.1| ATP synthase subunit alpha [Bacillus sp. TA2.A1] Length = 502 Score = 811 bits (2095), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/503 (78%), Positives = 445/503 (88%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIRPEEIS+LIK QIE Y+AD+EV E+GTVIQVGDGIARV+GLE MAGELLEF NGV+ Sbjct: 1 MSIRPEEISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENGVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMA NLEE NVGVVILG YTEIREG QVKRTG+IM+VPVGEA+LGRVVN LGQPLDG+GP Sbjct: 61 GMAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I T E+RP+E+ APGV+DRKSVHEP+QTG+KAID+M+PIGRGQRELIIGDRQTGKT IAI Sbjct: 121 IETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQKG + CIYVAIGQKQSTVA VVETLR+H AL+YTIVVTASASEP+PLLY+APY Sbjct: 181 DTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AGCAMGEYFMYKG+H LV+YDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 241 AGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSD GGGSLTALPFIETQA DVSAYIPTNVISITDGQIFLESDLF SG RPA+NVG Sbjct: 301 AAKLSDEKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 ISVSRVGG+AQIKAMKKVAG+LRLDLAQYRELQAF+QFGSDLDK+TQA+LNRG R +EIL Sbjct: 361 ISVSRVGGAAQIKAMKKVAGTLRLDLAQYRELQAFAQFGSDLDKATQAKLNRGERTVEIL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ ++P+ VE QVIS+Y G +DDIPV+DV+RFE+E L++M +N ++ I T + Sbjct: 421 KQDEHKPMPVEEQVISIYAVTNGFMDDIPVEDVRRFEEELLSFMRANKDSLLDHIRQTGE 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L E L AIE+FK+GF S Sbjct: 481 LPDTKE--LDAAIEEFKKGFTPS 501 >ref|NP_834970.1| ATP synthase alpha chain [Bacillus cereus ATCC 14579] gb|AAP12171.1| ATP synthase alpha chain [Bacillus cereus ATCC 14579] Length = 505 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/503 (75%), Positives = 441/503 (87%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIR EEIS+LIK QIE Y+++IEV+++GTVIQVGDGIAR +GL+N MAGEL+EFSNGV+ Sbjct: 4 MSIRAEEISALIKQQIENYQSEIEVSDVGTVIQVGDGIARAHGLDNVMAGELVEFSNGVM 63 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 G+A NLEE+NVG++ILG YTEIREGD+V+RTG+IMQVPVG+ ++GRVVN LGQP+DG GP Sbjct: 64 GLAQNLEENNVGIIILGPYTEIREGDEVRRTGRIMQVPVGKELIGRVVNPLGQPVDGLGP 123 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I TT RP+E+ APGV+DRKSVHEP+QTG+KAIDA+VPIGRGQRELIIGDRQTGKTA+A+ Sbjct: 124 INTTNTRPIESPAPGVMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTAVAL 183 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQK M CIYVAIGQK+STV VVETLR+HGALEYTIVVTASAS+P+PLLY+APY Sbjct: 184 DTIINQKDEDMICIYVAIGQKESTVRNVVETLRKHGALEYTIVVTASASQPAPLLYLAPY 243 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG MGE FMY G+HVLV+YDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 244 AGVTMGEEFMYNGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 303 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA GGGSLTALPFIETQA DVSAYIPTNVISITDGQIFL+SDLF SG RPAI+ G Sbjct: 304 AAKLSDAKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLQSDLFFSGVRPAIDAG 363 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 SVSRVGGSAQIKAM KV+G+LRLDLA YREL+AF+QFGSDLDK+TQA+LNRGAR +E+L Sbjct: 364 TSVSRVGGSAQIKAMSKVSGTLRLDLASYRELEAFAQFGSDLDKATQAKLNRGARTVEVL 423 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQG+++PL VE QVI LY +G LDDIPV D+ RFE+EF A++DSNA + + I TK Sbjct: 424 KQGLHKPLRVEKQVIILYALTRGFLDDIPVVDITRFEEEFHAWLDSNATDLLEEIRTTKK 483 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L D++ A AI FK+ F S Sbjct: 484 LADDDKFA--AAINGFKKVFVAS 504 >ref|NP_653764.1| ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain [Bacillus anthracis A2012] ref|NP_847707.1| ATP synthase F1, alpha subunit [Bacillus anthracis str. Ames] ref|NP_981724.1| ATP synthase F1, alpha subunit [Bacillus cereus ATCC 10987] gb|AAP29193.1| ATP synthase F1, alpha subunit [Bacillus anthracis str. Ames] gb|AAS44332.1| ATP synthase F1, alpha subunit [Bacillus cereus ATCC 10987] Length = 502 Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/503 (75%), Positives = 441/503 (87%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIR EEIS+LIK QIE Y+++IEV+++GTVIQVGDGIAR +GL+N MAGEL+EFSNGV+ Sbjct: 1 MSIRAEEISALIKQQIENYQSEIEVSDVGTVIQVGDGIARAHGLDNVMAGELVEFSNGVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 G+A NLEE+NVG++ILG YTEIREGD+V+RTG+IMQVPVG+ ++GRVVN LGQP+DG GP Sbjct: 61 GLAQNLEENNVGIIILGPYTEIREGDEVRRTGRIMQVPVGKELIGRVVNPLGQPVDGLGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I TT RP+E+ APGV+DRKSVHEP+QTG+KAIDA+VPIGRGQRELIIGDRQTGKTA+A+ Sbjct: 121 INTTNTRPIESPAPGVMDRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTAVAL 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQK M CIYVAIGQK+STV VVETLR+HGALEYTIVVTASAS+P+PLLY+APY Sbjct: 181 DTIINQKDEDMICIYVAIGQKESTVRNVVETLRKHGALEYTIVVTASASQPAPLLYLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG MGE FMY G+HVLV+YDDLSKQA+AYRELSLLLRRPPGREA+PGDVFYLHSRLLER Sbjct: 241 AGVTMGEEFMYNGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA GGGSLTALPFIETQA DVSAYIPTNVISITDGQIFL+SDLF SG RPAI+ G Sbjct: 301 AAKLSDAKGGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLQSDLFFSGVRPAIDAG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 SVSRVGGSAQIKAM KV+G+LRLDLA YREL+AF+QFGSDLDK+TQA+LNRGAR +E+L Sbjct: 361 TSVSRVGGSAQIKAMSKVSGTLRLDLASYRELEAFAQFGSDLDKATQAKLNRGARTVEVL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQG+++PL VE QVI LY +G LDDIPV D+ RFE+EF A++DSNA + + I TK Sbjct: 421 KQGLHKPLRVEKQVIILYALTRGFLDDIPVVDITRFEEEFHAWLDSNATDLLEEIRTTKK 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L D++ A AI FK+ F S Sbjct: 481 LADDDKFA--AAINGFKKVFVAS 501 >sp|P42005|ATPA_BACST ATP synthase alpha chain dbj|BAA07253.1| ATPase subunit alpha [Geobacillus stearothermophilus] Length = 502 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/503 (73%), Positives = 443/503 (88%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SIR EEIS+LIK QIE Y++ I+V+++GTVIQ+GDGIAR +GL+N M+GEL+EF+N V+ Sbjct: 1 MSIRAEEISALIKQQIENYESQIQVSDVGTVIQIGDGIARAHGLDNVMSGELVEFANAVM 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMALNLEE+NVG+VILG YT I+EGD+V+RTG+IM+VPVGEA++GRVVN LGQP+DG GP Sbjct: 61 GMALNLEENNVGIVILGPYTGIKEGDEVRRTGRIMEVPVGEALIGRVVNPLGQPVDGLGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 + TTE RP+E+ APGV+DR+SVHEP+QTG+KAIDA+VPIGRGQRELIIGDRQTGKT++AI Sbjct: 121 VETTETRPIESPAPGVMDRRSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTSVAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 D IINQK M CIYVAIGQK+STV VVETLR+HGAL+YTIVVTASAS+P+PLL++APY Sbjct: 181 DTIINQKDQNMICIYVAIGQKESTVRTVVETLRKHGALDYTIVVTASASQPAPLLFLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG AMGEYFMYKG+HVLV+YDDLSKQA+AYRELSL +RRPPGREA+PGD+FYLHSRLLER Sbjct: 241 AGVAMGEYFMYKGQHVLVVYDDLSKQAAAYRELSLFVRRPPGREAYPGDIFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA GGGSLTALPF+ETQA D+SAYIPTNVISITDGQIFL+SDLF S RPAIN G Sbjct: 301 AAKLSDAKGGGSLTALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSRVRPAINAG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 +SVSRVGG+AQIKAMKKVAG+LRLDLA YREL+AF+QFGSDLDK+TQA+L RGAR +E+L Sbjct: 361 LSVSRVGGAAQIKAMKKVAGTLRLDLAAYRELEAFAQFGSDLDKATQAKLARGARTVEVL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ ++QP+ VE QV+ +Y +G LDDIPVKDV+RFEKEF ++D N + + I TKD Sbjct: 421 KQDLHQPIPVEKQVLIIYALTRGFLDDIPVKDVRRFEKEFYLWLDQNGQHLLEHIRTTKD 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L NE L +AIE FK+ F S Sbjct: 481 LP--NEDDLNQAIEAFKKTFVVS 501 >ref|NP_391564.1| ATP synthase (subunit alpha) [Bacillus subtilis] sp|P37808|ATPA_BACSU ATP synthase alpha chain (Vegetative protein 100) (VEG100) pir||I40366 H+-transporting two-sector ATPase (EC 3.6.3.14) alpha chain - Bacillus subtilis emb|CAA82258.1| ATP synthase subunit alpha [Bacillus subtilis] emb|CAB15700.1| ATP synthase (subunit alpha) [Bacillus subtilis subsp. subtilis str. 168] Length = 502 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/503 (73%), Positives = 442/503 (87%), Gaps = 2/503 (0%) Query: 1 LSIRPEEISSLIKSQIEQYKADIEVAEIGTVIQVGDGIARVYGLENAMAGELLEFSNGVV 60 +SI+ EEIS+LIK QI+ Y++DIEV ++GTVIQVGDGIARV+GL+N MAGEL+EFSNGV+ Sbjct: 1 MSIKAEEISTLIKQQIQNYQSDIEVQDVGTVIQVGDGIARVHGLDNCMAGELVEFSNGVL 60 Query: 61 GMALNLEESNVGVVILGEYTEIREGDQVKRTGQIMQVPVGEAMLGRVVNALGQPLDGKGP 120 GMA NLEESNVG+VILG ++EIREGD+VKRTG+IM+VPVGE ++GR+VN LGQP+DG GP Sbjct: 61 GMAQNLEESNVGIVILGPFSEIREGDEVKRTGRIMEVPVGEELIGRIVNPLGQPVDGLGP 120 Query: 121 IATTEFRPVENNAPGVIDRKSVHEPMQTGLKAIDAMVPIGRGQRELIIGDRQTGKTAIAI 180 I T++ RP+E+ APGV+DRKSVHEP+QTG+KAIDA++PIGRGQRELIIGDRQTGKT++AI Sbjct: 121 ILTSKTRPIESPAPGVMDRKSVHEPLQTGIKAIDALIPIGRGQRELIIGDRQTGKTSVAI 180 Query: 181 DAIINQKGNGMKCIYVAIGQKQSTVAQVVETLRRHGALEYTIVVTASASEPSPLLYIAPY 240 DAI+NQK M C+YVAIGQK+STV VVETLR+HGAL+YTIVVTASAS+P+PLLY+APY Sbjct: 181 DAILNQKDQDMICVYVAIGQKESTVRGVVETLRKHGALDYTIVVTASASQPAPLLYLAPY 240 Query: 241 AGCAMGEYFMYKGEHVLVIYDDLSKQASAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 AG M E FMY G+HVLV+YDDLSKQA+AYRELSLLLRRPPGREAFPGDVFYLHSRLLER Sbjct: 241 AGVTMAEEFMYNGKHVLVVYDDLSKQAAAYRELSLLLRRPPGREAFPGDVFYLHSRLLER 300 Query: 301 AAKLSDALGGGSLTALPFIETQASDVSAYIPTNVISITDGQIFLESDLFNSGQRPAINVG 360 AAKLSDA G GS+TALPF+ETQA D+SAYIPTNVISITDGQIFL+SDLF SG RPAIN G Sbjct: 301 AAKLSDAKGAGSITALPFVETQAGDISAYIPTNVISITDGQIFLQSDLFFSGVRPAINAG 360 Query: 361 ISVSRVGGSAQIKAMKKVAGSLRLDLAQYRELQAFSQFGSDLDKSTQARLNRGARMMEIL 420 +SVSRVGGSAQIKAMKKV+G+LRLDLA YREL+AF+QFGSDLD++TQA+LNRGAR +E+L Sbjct: 361 LSVSRVGGSAQIKAMKKVSGTLRLDLASYRELEAFAQFGSDLDQATQAKLNRGARTVEVL 420 Query: 421 KQGVNQPLSVEHQVISLYTAVKGHLDDIPVKDVKRFEKEFLAYMDSNAAAVAKSISDTKD 480 KQ +N+PL VE QV LY KG+LDDIPV D++RFE+E+ Y+D N + I+ T + Sbjct: 421 KQDLNKPLPVEKQVAILYALTKGYLDDIPVADIRRFEEEYYMYLDQNHKDLLDGIAKTGN 480 Query: 481 LTADNEAALKEAIEKFKRGFATS 503 L AD + K AIE FKR FA S Sbjct: 481 LPADED--FKAAIEGFKRTFAPS 501 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 666,333,391 Number of extensions: 27116553 Number of successful extensions: 85372 Number of sequences better than 1.0e-05: 4596 Number of HSP's gapped: 82595 Number of HSP's successfully gapped: 4600 Length of query: 503 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 373 Effective length of database: 404,274,708 Effective search space: 150794466084 Effective search space used: 150794466084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)