BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0004.p (465 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ10090.1| ATP synthase subunit beta [Bacillus sp. TA2.A1] 712 0.0 ref|NP_653762.1| ATP-synt_ab, ATP synthase alpha/beta family, nu... 682 0.0 ref|NP_981722.1| ATP synthase F1, beta subunit [Bacillus cereus ... 678 0.0 sp|P22478|ATPB_BACPF ATP synthase beta chain >gi|12061046|gb|AAG... 675 0.0 ref|NP_834968.1| ATP synthase beta chain [Bacillus cereus ATCC 1... 673 0.0 >gb|AAQ10090.1| ATP synthase subunit beta [Bacillus sp. TA2.A1] Length = 462 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/466 (76%), Positives = 393/466 (84%), Gaps = 5/466 (1%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGR++ +MGPVVDI+FE GQLP+I+NAI I G T LT+E + HLGDN+VRC+ Sbjct: 1 MNKGRIIQVMGPVVDIQFESGQLPDIYNAITI--ERPQGGT--LTVEAAVHLGDNVVRCV 56 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD-RNPIHRLAP 119 AM+STDGLVRGLEA+D G PISVPVG ATLGRVFNVLG PID EV A+ R+PIHR AP Sbjct: 57 AMASTDGLVRGLEAVDTGAPISVPVGKATLGRVFNVLGEPIDEQGEVNAEERHPIHRPAP 116 Query: 120 TFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGIS 179 F+ELST EILETGIKVIDLLAPYA TV IQELINN+AQEHGG+S Sbjct: 117 EFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNVAQEHGGLS 176 Query: 180 VFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDVE 239 VFAGVGERTREGNDLYHEM DSGVI KT+MVFGQMNEPPGARLRVALTGLTMAEYFRD E Sbjct: 177 VFAGVGERTREGNDLYHEMKDSGVISKTSMVFGQMNEPPGARLRVALTGLTMAEYFRDRE 236 Query: 240 GRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTSI 299 G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGS+TSI Sbjct: 237 GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSITSI 296 Query: 300 QAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEEH 359 QAIYV HLDATTNLERK++E GI+PAVDPLAS+SRIL+P +VGEEH Sbjct: 297 QAIYVPADDYTDPAPATTFAHLDATTNLERKLAEMGIYPAVDPLASTSRILSPAVVGEEH 356 Query: 360 YNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTGF 419 Y VA+GV+Q+LQRY +LQDIIAILGMDELS+EDK+IVARARK++RFLSQPFHVAEQFTG Sbjct: 357 YRVARGVQQVLQRYNDLQDIIAILGMDELSDEDKLIVARARKIQRFLSQPFHVAEQFTGM 416 Query: 420 KGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 GKYVP+KETVR FKEILEGKHD+LPE AF VGTI+EAVEKAK + Sbjct: 417 PGKYVPVKETVRGFKEILEGKHDNLPEEAFYMVGTIDEAVEKAKKL 462 >ref|NP_653762.1| ATP-synt_ab, ATP synthase alpha/beta family, nucleotide-binding domain [Bacillus anthracis A2012] ref|NP_847705.1| ATP synthase F1, beta subunit [Bacillus anthracis str. Ames] gb|AAP29191.1| ATP synthase F1, beta subunit [Bacillus anthracis str. Ames] Length = 469 Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/467 (73%), Positives = 382/467 (81%), Gaps = 2/467 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGRV IMGPVVD++F+ G+LPEI+NA+ + S NG++ LT EV+ HLGD+ VR + Sbjct: 1 MNKGRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGTSINLTFEVALHLGDDTVRTV 60 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHRLA 118 AMSSTDGLVRG E D G ISVPVGDATLGRVFNVLG+ ID EV AD R+PIHR A Sbjct: 61 AMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQA 120 Query: 119 PTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGI 178 P F+ELST+ EILETGIKV+DLLAPY TV IQELINNIAQEHGGI Sbjct: 121 PAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGI 180 Query: 179 SVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDV 238 SVFAGVGERTREGNDLYHEM+DSGVIKKTAMVFGQMNEPPGAR RVALTGLTMAE+FRD Sbjct: 181 SVFAGVGERTREGNDLYHEMSDSGVIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDE 240 Query: 239 EGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 298 +G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST KGS+TS Sbjct: 241 QGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKGSITS 300 Query: 299 IQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEE 358 IQA+YV HLDATTNLER++++ GI+PAVDPLAS+SR L+PEIVGEE Sbjct: 301 IQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSPEIVGEE 360 Query: 359 HYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTG 418 HY VA+ V+Q LQRY ELQDIIAILGMDELSEEDK++V RAR+++ FLSQ FHVAEQFTG Sbjct: 361 HYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRIQFFLSQNFHVAEQFTG 420 Query: 419 FKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 KG YVP+KETVR FKEILEGK+DDLPE AF VG IEE +E AK M Sbjct: 421 QKGSYVPVKETVRGFKEILEGKYDDLPEDAFRLVGGIEEVIENAKKM 467 >ref|NP_981722.1| ATP synthase F1, beta subunit [Bacillus cereus ATCC 10987] gb|AAS44330.1| ATP synthase F1, beta subunit [Bacillus cereus ATCC 10987] Length = 468 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/467 (73%), Positives = 381/467 (81%), Gaps = 3/467 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGRV IMGPVVD++F+ G+LPEI+NA+ + S NG + LT EV+ HLGD+ VR + Sbjct: 1 MNKGRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGELN-LTFEVALHLGDDTVRTV 59 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHRLA 118 AMSSTDGLVRG E D G ISVPVGDATLGRVFNVLG+ ID EV AD R+PIHR A Sbjct: 60 AMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGEVPADVRRDPIHRQA 119 Query: 119 PTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGI 178 P F+ELST+ EILETGIKV+DLLAPY TV IQELINNIAQEHGGI Sbjct: 120 PAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGI 179 Query: 179 SVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDV 238 SVFAGVGERTREGNDLYHEM+DSGVIKKTAMVFGQMNEPPGAR RVALTGLTMAEYFRD Sbjct: 180 SVFAGVGERTREGNDLYHEMSDSGVIKKTAMVFGQMNEPPGARQRVALTGLTMAEYFRDE 239 Query: 239 EGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 298 +G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST KGS+TS Sbjct: 240 QGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKGSITS 299 Query: 299 IQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEE 358 IQA+YV HLDATTNLER++++ GI+PAVDPLAS+SR L+PEIVGEE Sbjct: 300 IQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSPEIVGEE 359 Query: 359 HYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTG 418 HY VA+ V+Q LQRY ELQDIIAILGMDELSEEDK++V RAR+++ FLSQ FHVAEQFTG Sbjct: 360 HYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRIQFFLSQNFHVAEQFTG 419 Query: 419 FKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 KG YVP+K+TVR FKEILEGK+DDLPE AF VG IEE +E AK M Sbjct: 420 QKGSYVPVKDTVRGFKEILEGKYDDLPEDAFRLVGGIEEVIENAKKM 466 >sp|P22478|ATPB_BACPF ATP synthase beta chain gb|AAG48363.1| ATP synthase beta subunit [Bacillus pseudofirmus] Length = 470 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/469 (72%), Positives = 383/469 (81%), Gaps = 4/469 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELT--LEVSNHLGDNLVR 58 MN G + +MGPVVD++F+ GQLPEI NA+K+V A+ + ++T LEV+ HLGD+ VR Sbjct: 1 MNTGHITQVMGPVVDVKFKSGQLPEINNALKVVQVGADKNAVDVTVTLEVALHLGDDSVR 60 Query: 59 CIAMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHR 116 +AM STDGLVRG EALD G PISVPVG+ATLGRVFNVLG ID G V AD R+PIHR Sbjct: 61 TVAMGSTDGLVRGTEALDTGAPISVPVGEATLGRVFNVLGEAIDLGEPVAADVKRDPIHR 120 Query: 117 LAPTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHG 176 AP F+ELST EILETGIKV+DLLAPY TV IQELINNIAQEHG Sbjct: 121 EAPKFEELSTTTEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHG 180 Query: 177 GISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFR 236 GISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGAR+RVAL+GLTMAE+FR Sbjct: 181 GISVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARMRVALSGLTMAEHFR 240 Query: 237 DVEGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSV 296 D +G+D LLF+DNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTK GSV Sbjct: 241 DRDGQDVLLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKVGSV 300 Query: 297 TSIQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVG 356 TSIQAIYV HLDATTNLERK+SE GI+PAVDPLAS+SR L+PEIVG Sbjct: 301 TSIQAIYVPADDYTDPAPATTFAHLDATTNLERKLSEMGIYPAVDPLASTSRALSPEIVG 360 Query: 357 EEHYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQF 416 EEHY+VA+ V+Q LQ+Y ELQDIIAILGMDELSEEDK++V RAR+++ FLSQ FHVAEQF Sbjct: 361 EEHYSVARQVQQTLQKYKELQDIIAILGMDELSEEDKLVVHRARRIQFFLSQNFHVAEQF 420 Query: 417 TGFKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 TG KG YVP+KET++ FKEIL+GK+DDLPE AF VG IEE +EK K M Sbjct: 421 TGQKGSYVPVKETIKGFKEILDGKYDDLPEDAFRLVGRIEEVIEKGKQM 469 >ref|NP_834968.1| ATP synthase beta chain [Bacillus cereus ATCC 14579] gb|AAP12169.1| ATP synthase beta chain [Bacillus cereus ATCC 14579] Length = 468 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/467 (72%), Positives = 380/467 (81%), Gaps = 3/467 (0%) Query: 1 MNKGRVVSIMGPVVDIEFERGQLPEIFNAIKIVTSLANGSTSELTLEVSNHLGDNLVRCI 60 MNKGRV IMGPVVD++F+ G+LPEI+NA+ + S NGS + LT EV+ HLGD+ VR + Sbjct: 1 MNKGRVTQIMGPVVDVKFDGGKLPEIYNALTVKQSNENGSMN-LTFEVALHLGDDTVRTV 59 Query: 61 AMSSTDGLVRGLEALDQGGPISVPVGDATLGRVFNVLGNPIDNGAEVVAD--RNPIHRLA 118 AMSSTDGLVRG E D G ISVPVGDATLGRVFNVLG+ ID E+ AD R+PIHR A Sbjct: 60 AMSSTDGLVRGTEVEDTGKAISVPVGDATLGRVFNVLGDAIDLDGELPADVHRDPIHRQA 119 Query: 119 PTFDELSTQAEILETGIKVIDLLAPYAXXXXXXXXXXXXXXXTVTIQELINNIAQEHGGI 178 P F+ELST+ EILETGIKV+DLLAPY TV IQELINNIAQEHGGI Sbjct: 120 PAFEELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGI 179 Query: 179 SVFAGVGERTREGNDLYHEMTDSGVIKKTAMVFGQMNEPPGARLRVALTGLTMAEYFRDV 238 SVFAGVGERTREGNDLYHEM+DSGVIKKTAMVFGQMNEPPGAR RVALTGLTMAE+FRD Sbjct: 180 SVFAGVGERTREGNDLYHEMSDSGVIKKTAMVFGQMNEPPGARQRVALTGLTMAEHFRDE 239 Query: 239 EGRDTLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTKKGSVTS 298 +G+D LLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST KGS+TS Sbjct: 240 QGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKGSITS 299 Query: 299 IQAIYVXXXXXXXXXXXXXXXHLDATTNLERKISEKGIFPAVDPLASSSRILAPEIVGEE 358 IQA+YV HLDATTNLER++++ GI+PAVDPLAS+SR L+PEIVGEE Sbjct: 300 IQAVYVPADDYTDPAPATTFAHLDATTNLERRLTQMGIYPAVDPLASTSRALSPEIVGEE 359 Query: 359 HYNVAQGVKQLLQRYTELQDIIAILGMDELSEEDKVIVARARKVERFLSQPFHVAEQFTG 418 HY VA+ V+Q LQRY ELQDIIAILGMDELSEEDK++V RAR+++ FLSQ FHVAEQFTG Sbjct: 360 HYEVARQVQQTLQRYKELQDIIAILGMDELSEEDKLVVHRARRIQFFLSQNFHVAEQFTG 419 Query: 419 FKGKYVPIKETVRSFKEILEGKHDDLPEAAFLFVGTIEEAVEKAKSM 465 KG YVP+K TV FKEILEGK+DDLPE AF VG IEE +E AK M Sbjct: 420 QKGSYVPVKNTVSGFKEILEGKYDDLPEDAFRLVGGIEEVIENAKKM 466 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 589,995,270 Number of extensions: 22697229 Number of successful extensions: 75412 Number of sequences better than 1.0e-05: 4546 Number of HSP's gapped: 65982 Number of HSP's successfully gapped: 4568 Length of query: 465 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 336 Effective length of database: 406,989,807 Effective search space: 136748575152 Effective search space used: 136748575152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)