BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0003.p (140 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA96810.1| FoF1-ATP synthase epsilon subunit [thermophilic ... 118 4e-26 ref|NP_834967.1| ATP synthase epsilon chain [Bacillus cereus ATC... 117 8e-26 ref|NP_653761.1| ATP-synt_DE_N, ATP synthase, Delta/Epsilon chai... 117 1e-25 sp|P22480|ATPE_BACPF ATP synthase epsilon chain (ATP synthase F1... 116 2e-25 ref|NP_244620.1| ATP synthase epsilon subunit [Bacillus halodura... 112 2e-24 >dbj|BAA96810.1| FoF1-ATP synthase epsilon subunit [thermophilic bacterium PS3] Length = 133 Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 2/135 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + T + +VTP+ VY V ++VK G+LGILPGHIPLV PL+++ +K G T Sbjct: 1 MKTIHVSVVTPDGPVYEDDVEMVSVKAKSGELGILPGHIPLVAPLEISAARLKKGGKTQY 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 IAV GGF+EV DKVT+LA++AE +IDV LQ S+QD+ID +RAEL Sbjct: 61 IAVSGGFLEVRPDKVTILAQAAERAEDIDVLRAKAAKERAERRLQ--SQQDDIDFKRAEL 118 Query: 123 ALQRAVTRIKVSTGK 137 AL+RA+ R+ V+ K Sbjct: 119 ALKRAMNRLSVAEMK 133 >ref|NP_834967.1| ATP synthase epsilon chain [Bacillus cereus ATCC 14579] ref|NP_981721.1| ATP synthase F1, epsilon subunit [Bacillus cereus ATCC 10987] gb|AAP12168.1| ATP synthase epsilon chain [Bacillus cereus ATCC 14579] gb|AAS44329.1| ATP synthase F1, epsilon subunit [Bacillus cereus ATCC 10987] Length = 133 Score = 117 bits (293), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/135 (46%), Positives = 84/135 (62%), Gaps = 2/135 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + TF + IVTP+ VY K+V ++VK G++GILPGHIP V PL+++ + +K G T Sbjct: 1 MKTFPVSIVTPDGPVYEKEVEMVSVKAESGEMGILPGHIPTVAPLKISAVRLKNGGHTDY 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGF+EV DKVTVL+ SAE ID+ LQ KQ +D +RAE+ Sbjct: 61 VAVSGGFIEVRPDKVTVLSSSAEEANHIDIHRANEAKRRAEQRLQ--DKQAHVDFKRAEM 118 Query: 123 ALQRAVTRIKVSTGK 137 ALQRAV R+ VS K Sbjct: 119 ALQRAVNRLNVSDMK 133 >ref|NP_653761.1| ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain [Bacillus anthracis A2012] ref|NP_847704.1| ATP synthase F1, epsilon subunit [Bacillus anthracis str. Ames] gb|AAP29190.1| ATP synthase F1, epsilon subunit [Bacillus anthracis str. Ames] Length = 133 Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 84/135 (62%), Gaps = 2/135 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 + TF + IVTP+ VY K+V ++VK G++GILPGHIP V PL+++ + +K G T Sbjct: 1 MKTFPVSIVTPDGPVYEKEVEMVSVKAESGEMGILPGHIPTVAPLKISAVRLKNGGHTDY 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGF+EV DKVTVL+ SAE ID+ +Q KQ +D +RAE+ Sbjct: 61 VAVSGGFIEVRPDKVTVLSSSAEEANHIDIHRANEAKRRAEQRMQ--DKQAHVDFKRAEM 118 Query: 123 ALQRAVTRIKVSTGK 137 ALQRAV R+ VS K Sbjct: 119 ALQRAVNRLNVSDMK 133 >sp|P22480|ATPE_BACPF ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) gb|AAG48364.1| ATP synthase epsilon subunit [Bacillus pseudofirmus] Length = 133 Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 2/135 (1%) Query: 3 VNTFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVT 62 ++T + +VTP+ VY V+ + V+ +G+LGILP HIPLV PL V + +K + Sbjct: 1 MSTIRVNVVTPDGKVYDGDVDMVVVRTVEGELGILPKHIPLVAPLTVGAVRLKKGNSEEQ 60 Query: 63 IAVHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAEL 122 +AV GGFVEV D+VT+LAE+AELP+ IDV L S +KQD +D +RAEL Sbjct: 61 VAVSGGFVEVRPDQVTILAEAAELPSAIDVDRARAAKERAESRLNS-TKQDAVDFKRAEL 119 Query: 123 ALQRAVTRIKVSTGK 137 AL+RA+ R+ V TGK Sbjct: 120 ALKRAINRLDV-TGK 133 >ref|NP_244620.1| ATP synthase epsilon subunit [Bacillus halodurans] sp|Q9K6H6|ATPE_BACHD ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) pir||A84119 ATP synthase epsilon subunit atpC [imported] - Bacillus halodurans (strain C-125) dbj|BAB07472.1| ATP synthase epsilon subunit [Bacillus halodurans] Length = 133 Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 84/130 (64%), Gaps = 1/130 (0%) Query: 5 TFLLEIVTPEHLVYSKQVNSLTVKGADGDLGILPGHIPLVTPLQVAPMFIKADGATVTIA 64 T + +VTP+ VY V+ ++VK +G+LGILP HIPLV PL V + +K +A Sbjct: 3 TLHVNVVTPDGKVYEGDVDMVSVKTVEGELGILPRHIPLVAPLTVGAVRLKKGSTVDLVA 62 Query: 65 VHGGFVEVHKDKVTVLAESAELPTEIDVXXXXXXXXXXXXXLQSRSKQDEIDHRRAELAL 124 V GGFVEV D+VT+LAE+AELP++IDV LQ ++KQ+ ID +RAEL+L Sbjct: 63 VSGGFVEVRPDQVTILAEAAELPSDIDVERARSAKERAEKRLQ-QAKQENIDFKRAELSL 121 Query: 125 QRAVTRIKVS 134 +RA R+ V+ Sbjct: 122 RRATNRLDVA 131 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 169,666,186 Number of extensions: 5548625 Number of successful extensions: 13127 Number of sequences better than 1.0e-05: 482 Number of HSP's gapped: 12926 Number of HSP's successfully gapped: 482 Length of query: 140 Length of database: 757,237,578 Length adjustment: 101 Effective length of query: 39 Effective length of database: 483,012,579 Effective search space: 18837490581 Effective search space used: 18837490581 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)