BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0002.p
         (65 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_391559.1| ywzB [Bacillus subtilis] >gi|7475531|pir||G7007...    52   3e-06
ref|NP_244618.1| BH3751~unknown conserved protein in B. subtilis...    51   6e-06

>ref|NP_391559.1| ywzB [Bacillus subtilis]
 pir||G70070 hypothetical protein ywzB - Bacillus subtilis
 emb|CAB15695.1| ywzB [Bacillus subtilis subsp. subtilis str. 168]
          Length = 76

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          ++V L  +A++WWALQ + +D +I+  K  Q R       I +G  VA F LDYL +S Q
Sbjct: 12 IVVHLIFIAVTWWALQAVNIDPLIKKGKVVQARLLMILLTIAIGTAVANFFLDYLNYSQQ 71

Query: 61 IRNMF 65
          +  +F
Sbjct: 72 LPYLF 76


>ref|NP_244618.1| BH3751~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
 pir||G84118 hypothetical protein BH3751 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB07470.1| BH3751~unknown conserved protein in B. subtilis [Bacillus
          halodurans]
          Length = 77

 Score = 51.2 bits (121), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 1  MIVSLFCVAISWWALQNLKLDLVIRYPKSPQGRXXXXXXAIVLGHFVAGFLLDYLGWSGQ 60
          ++V +  +A  WWALQ+ K DL ++ PKSPQ         I L + V+ F L YL  S  
Sbjct: 12 IVVHVMFLAAVWWALQSFKFDLFVKNPKSPQAMLLMIFVTIALAYLVSSFFLQYLESSLM 71

Query: 61 IR 62
          +R
Sbjct: 72 LR 73


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.333    0.146    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 87,886,817
Number of extensions: 2308583
Number of successful extensions: 4556
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4556
Number of HSP's successfully gapped: 3
Length of query: 65
Length of database: 757,237,578
Length adjustment: 36
Effective length of query: 29
Effective length of database: 659,494,014
Effective search space: 19125326406
Effective search space used: 19125326406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 120 (50.8 bits)