BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0063.0004.p
         (40 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC06852.1| superoxide-inducible protein [Bacillus circulans]      67   1e-10
ref|NP_240888.1| superoxide-inducible protein [Bacillus halodura...    61   1e-08
ref|NP_387892.1| similar to hypothetical proteins [Bacillus subt...    60   1e-08
ref|NP_976339.1| pyridoxine biosynthesis protein [Bacillus cereu...    60   2e-08
ref|NP_653965.1| SOR_SNZ, SOR/SNZ family [Bacillus anthracis A20...    60   2e-08

>dbj|BAC06852.1| superoxide-inducible protein [Bacillus circulans]
          Length = 293

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 1  METGTSRVKRGMAEMQKGGVIMDVMNAEQAKIA 33
          METGTSRVKRGMAEMQKGGVIMDVMNAEQAK+A
Sbjct: 1  METGTSRVKRGMAEMQKGGVIMDVMNAEQAKVA 33


>ref|NP_240888.1| superoxide-inducible protein [Bacillus halodurans]
 pir||F83652 superoxide-inducible protein BH0022 [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB03741.1| superoxide-inducible protein [Bacillus halodurans]
          Length = 298

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 32/33 (96%)

Query: 1  METGTSRVKRGMAEMQKGGVIMDVMNAEQAKIA 33
          ++TGT RVKRGMAEMQKGGVIMDV+NAEQAKIA
Sbjct: 2  VDTGTDRVKRGMAEMQKGGVIMDVVNAEQAKIA 34


>ref|NP_387892.1| similar to hypothetical proteins [Bacillus subtilis]
 sp|P37527|YAAD_BACSU 31.5 kDa guanylylated protein yaaD (Superoxide-inducible protein
          7) (SOI7)
 pir||S66041 conserved hypothetical protein yaaD - Bacillus subtilis
 dbj|BAA05247.1| unknown [Bacillus subtilis]
 emb|CAB11787.1| yaaD [Bacillus subtilis subsp. subtilis str. 168]
          Length = 294

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/32 (90%), Positives = 31/32 (96%)

Query: 2  ETGTSRVKRGMAEMQKGGVIMDVMNAEQAKIA 33
          +TGT RVKRGMAEMQKGGVIMDV+NAEQAKIA
Sbjct: 3  QTGTERVKRGMAEMQKGGVIMDVINAEQAKIA 34


>ref|NP_976339.1| pyridoxine biosynthesis protein [Bacillus cereus ATCC 10987]
 gb|AAS38947.1| pyridoxine biosynthesis protein [Bacillus cereus ATCC 10987]
          Length = 295

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 3  TGTSRVKRGMAEMQKGGVIMDVMNAEQAKIA 33
          TGT RVKRGMAEMQKGGVIMDV+NAEQAKIA
Sbjct: 5  TGTERVKRGMAEMQKGGVIMDVINAEQAKIA 35


>ref|NP_653965.1| SOR_SNZ, SOR/SNZ family [Bacillus anthracis A2012]
 ref|NP_842581.1| pyridoxine biosynthesis protein [Bacillus anthracis str. Ames]
 gb|AAP24067.1| pyridoxine biosynthesis protein [Bacillus anthracis str. Ames]
          Length = 295

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 3  TGTSRVKRGMAEMQKGGVIMDVMNAEQAKIA 33
          TGT RVKRGMAEMQKGGVIMDV+NAEQAKIA
Sbjct: 5  TGTERVKRGMAEMQKGGVIMDVINAEQAKIA 35


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.124    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 36,865,526
Number of extensions: 529670
Number of successful extensions: 669
Number of sequences better than 1.0e-05: 23
Number of HSP's gapped: 669
Number of HSP's successfully gapped: 23
Length of query: 40
Length of database: 757,237,578
Length adjustment: 14
Effective length of query: 26
Effective length of database: 719,226,192
Effective search space: 18699880992
Effective search space used: 18699880992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 120 (50.8 bits)