BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0003.p (108 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00161429.1| hypothetical protein Avar154701 [Anabaena var... 126 2e-28 ref|ZP_00061077.1| COG0739: Membrane proteins related to metallo... 124 5e-28 ref|ZP_00109858.1| COG0739: Membrane proteins related to metallo... 122 2e-27 ref|NP_923736.1| hypothetical protein glr0790 [Gloeobacter viola... 118 4e-26 ref|NP_682639.1| ORF_ID:tlr1849~hypothetical protein [Thermosyne... 115 3e-25 >ref|ZP_00161429.1| hypothetical protein Avar154701 [Anabaena variabilis ATCC 29413] Length = 374 Score = 126 bits (316), Expect = 2e-28, Method: Composition-based stats. Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 2/102 (1%) Query: 7 KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66 + H+G DFA G++I AADSGTVI A W+ GYG V+I+HGGG+ TLYGH E + V+ Sbjct: 275 RFHSGLDFAASYGSTIRAADSGTVIFAGWYGGYGRAVIINHGGGITTLYGHASE--LYVA 332 Query: 67 VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108 G V RGQ IA G+TG TGPHLHFEVR +G PV+P YL Sbjct: 333 EGQPVQRGQAIAAVGSTGLSTGPHLHFEVRRNGTPVNPGDYL 374 >ref|ZP_00061077.1| COG0739: Membrane proteins related to metalloendopeptidases [Clostridium thermocellum ATCC 27405] Length = 373 Score = 124 bits (312), Expect = 5e-28, Method: Composition-based stats. Identities = 57/102 (55%), Positives = 73/102 (71%), Gaps = 2/102 (1%) Query: 7 KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66 KMHTG D G SI AA++G VI + W GYGYTV+IDHGGG+ TLY H + + V+ Sbjct: 273 KMHTGVDIDAAYGASIVAANNGIVIFSGWEDGYGYTVIIDHGGGITTLYAHCSK--LLVN 330 Query: 67 VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108 GD+V +GQTIA++G+TG TG HLHFEVRIDG +P+ Y+ Sbjct: 331 KGDKVRKGQTIAQAGSTGTATGSHLHFEVRIDGNVTNPLDYI 372 >ref|ZP_00109858.1| COG0739: Membrane proteins related to metalloendopeptidases [Nostoc punctiforme] Length = 401 Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats. Identities = 59/102 (57%), Positives = 67/102 (65%), Gaps = 2/102 (1%) Query: 7 KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66 + H G DFA G+ I AADSG VI A W+ GYG V+IDHG G+ TLYGH E + VS Sbjct: 302 RFHAGLDFAASYGSKIRAADSGRVIFAGWYGGYGRAVIIDHGNGLTTLYGHTSE--LYVS 359 Query: 67 VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108 G V RGQ I G+TG TGPHLHFEVR +G PVDP YL Sbjct: 360 EGQAVERGQAIGAVGSTGFSTGPHLHFEVRRNGTPVDPANYL 401 >ref|NP_923736.1| hypothetical protein glr0790 [Gloeobacter violaceus] dbj|BAC88731.1| glr0790 [Gloeobacter violaceus PCC 7421] Length = 389 Score = 118 bits (295), Expect = 4e-26, Method: Composition-based stats. Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 2/105 (1%) Query: 4 EVGKMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGI 63 +V KMHTG D A GT I AAD GTV+ A W+ GYG V++ HGG + TLY H + Sbjct: 286 KVRKMHTGIDVAARSGTPIRAADDGTVLYAGWYGGYGRCVIVSHGGTLSTLYAHASR--L 343 Query: 64 KVSVGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108 V+VG V +G +A G+TG TGPHLHFEVR++G PV+P+ YL Sbjct: 344 FVTVGQTVKKGDPLAAVGSTGFSTGPHLHFEVRVNGSPVNPLDYL 388 >ref|NP_682639.1| ORF_ID:tlr1849~hypothetical protein [Thermosynechococcus elongatus BP-1] dbj|BAC09401.1| ORF_ID:tlr1849~hypothetical protein [Thermosynechococcus elongatus BP-1] Length = 384 Score = 115 bits (289), Expect = 3e-25, Method: Composition-based stats. Identities = 55/102 (53%), Positives = 70/102 (68%), Gaps = 2/102 (1%) Query: 7 KMHTGTDFAVPQGTSIHAADSGTVIVAEWWSGYGYTVVIDHGGGVWTLYGHIREGGIKVS 66 + H G DF GT I AA++GTVI A W GYG TV++DHGGG+ TLY H + + V Sbjct: 285 RFHAGVDFGADFGTPIFAAEAGTVIFAGWSGGYGQTVILDHGGGMTTLYAHAQR--LLVR 342 Query: 67 VGDRVSRGQTIAESGATGRVTGPHLHFEVRIDGKPVDPMPYL 108 G V +GQ IAE G+TG TGPHLHFEVR++G+P +P+ YL Sbjct: 343 EGQFVQQGQPIAEVGSTGLSTGPHLHFEVRLNGEPSNPLAYL 384 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 190,072,660 Number of extensions: 7853517 Number of successful extensions: 22088 Number of sequences better than 1.0e-05: 1365 Number of HSP's gapped: 21032 Number of HSP's successfully gapped: 1365 Length of query: 108 Length of database: 757,237,578 Length adjustment: 74 Effective length of query: 34 Effective length of database: 556,320,252 Effective search space: 18914888568 Effective search space used: 18914888568 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)