BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0015.p (193 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_240957.1| para-aminobenzoate synthetase glutamine amidot... 293 2e-78 ref|NP_842638.1| para-aminobenzoate synthase glutamine amidotran... 293 2e-78 ref|NP_829972.1| Anthranilate synthase component II [Bacillus ce... 290 9e-78 ref|NP_387956.1| para-aminobenzoate synthase glutamine amidotran... 290 1e-77 ref|NP_654019.1| GATase, Glutamine amidotransferase class-I [Bac... 287 8e-77 >ref|NP_240957.1| para-aminobenzoate synthetase glutamine amidotransferase component II/anthranilate synthase component II; para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II [Bacillus halodurans] pir||C83661 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II pabA [imported] - Bacillus halodurans (strain C-125) dbj|BAB03810.1| para-aminobenzoate synthetase glutamine amidotransferase component II/anthranilate synthase component II [Bacillus halodurans] Length = 198 Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 133/191 (69%), Positives = 164/191 (85%) Query: 1 MILVIDNYDSFTYNLVQYLGELGEEVRVSRNDEITIEEIEAFAPDHILISPGPCTPNEAG 60 MIL+IDNYDSFTYNLVQYLGE+G E+ V RNDE+++ EIE +PD ++ISPGPC+PNEAG Sbjct: 1 MILMIDNYDSFTYNLVQYLGEMGHELVVKRNDEVSVAEIEQMSPDFLMISPGPCSPNEAG 60 Query: 61 ISLALIQHFKGIIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGLES 120 +SL I+ F G +PIFGVCLGHQ+I QAFGG+VIRAERLMHGKTS + H+G ++F+ + + Sbjct: 61 VSLDAIRAFAGKLPIFGVCLGHQSIAQAFGGDVIRAERLMHGKTSEVTHDGKTIFKEVAN 120 Query: 121 PFTATRYHSLIVERETLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITNHGHTM 180 PFTATRYHSLIV+R+TLPDC EI+AETAEGEIMA+RHKE PIEGVQFHPESI+T+ G + Sbjct: 121 PFTATRYHSLIVKRQTLPDCFEISAETAEGEIMAIRHKELPIEGVQFHPESIMTDAGKRL 180 Query: 181 LRNFLKRRAGE 191 LRNF++ E Sbjct: 181 LRNFIETYGKE 191 >ref|NP_842638.1| para-aminobenzoate synthase glutamine amidotransferase, component II [Bacillus anthracis str. Ames] gb|AAP24124.1| para-aminobenzoate synthase glutamine amidotransferase, component II [Bacillus anthracis str. Ames] Length = 195 Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 130/189 (68%), Positives = 164/189 (86%) Query: 1 MILVIDNYDSFTYNLVQYLGELGEEVRVSRNDEITIEEIEAFAPDHILISPGPCTPNEAG 60 MIL+IDNYDSFT+NLVQ+LGELG+E+ V RNDE+TI +IE PD ++ISPGPC+PNEAG Sbjct: 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAG 60 Query: 61 ISLALIQHFKGIIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGLES 120 IS+ +I++F G IPIFGVCLGHQ+I Q FGG V+RAERLMHGKTSP+HH+G ++F + + Sbjct: 61 ISMDVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSPMHHDGKTIFSDIPN 120 Query: 121 PFTATRYHSLIVERETLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITNHGHTM 180 PFTATRYHSLIV++ETLPDCLE+T+ T EGEIMALRH PIEGVQFHPESI+T+HG + Sbjct: 121 PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMALRHTTLPIEGVQFHPESIMTSHGKEL 180 Query: 181 LRNFLKRRA 189 L+NF+++ + Sbjct: 181 LQNFIRKYS 189 >ref|NP_829972.1| Anthranilate synthase component II [Bacillus cereus ATCC 14579] gb|AAP07173.1| Anthranilate synthase component II [Bacillus cereus ATCC 14579] Length = 195 Score = 290 bits (743), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 129/189 (68%), Positives = 164/189 (86%) Query: 1 MILVIDNYDSFTYNLVQYLGELGEEVRVSRNDEITIEEIEAFAPDHILISPGPCTPNEAG 60 MIL+IDNYDSFT+NLVQ+LGELG+E+ V RNDE+TI +IE PD ++ISPGPC+PNEAG Sbjct: 1 MILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAG 60 Query: 61 ISLALIQHFKGIIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGLES 120 IS+ +I++F G IPIFGVCLGHQ+I Q FGG V+RA+RLMHGKTS +HH+G ++F + + Sbjct: 61 ISMEVIKYFAGKIPIFGVCLGHQSIAQVFGGEVVRADRLMHGKTSLMHHDGKTIFSDIPN 120 Query: 121 PFTATRYHSLIVERETLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITNHGHTM 180 PFTATRYHSLIV++ETLPDCLE+T+ T EGEIMALRHK PIEGVQFHPESI+T+HG + Sbjct: 121 PFTATRYHSLIVKKETLPDCLEVTSWTEEGEIMALRHKTLPIEGVQFHPESIMTSHGKEL 180 Query: 181 LRNFLKRRA 189 L+NF+++ + Sbjct: 181 LQNFIRKYS 189 >ref|NP_387956.1| para-aminobenzoate synthase glutamine amidotransferase (subunit B); anthranilate synthase (subunit II) [Bacillus subtilis] sp|P28819|PABA_BACSU Para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II [Includes: Para-aminobenzoate synthase glutamine amidotransferase component II (ADC synthase); Anthranilate synthase component II ] pir||B37854 para-aminobenzoate synthase (EC 4.1.3.-) glutamine amidotransferase chain B / anthranilate synthase chain II pabA - Bacillus subtilis gb|AAA22695.1| glutamine amidotransferase (trpG) dbj|BAA05310.1| glutamine aminotransferase [Bacillus subtilis] emb|CAB11851.1| anthranilate synthase (subunit II); para-aminobenzoate synthase glutamine amidotransferase (subunit B) [Bacillus subtilis subsp. subtilis str. 168] Length = 194 Score = 290 bits (742), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 134/193 (69%), Positives = 161/193 (83%) Query: 1 MILVIDNYDSFTYNLVQYLGELGEEVRVSRNDEITIEEIEAFAPDHILISPGPCTPNEAG 60 MIL+IDNYDSFTYNLVQYLGELGEE+ V RND ITI+EIE +PD ++ISPGPC+P+EAG Sbjct: 1 MILMIDNYDSFTYNLVQYLGELGEELVVKRNDSITIDEIEELSPDFLMISPGPCSPDEAG 60 Query: 61 ISLALIQHFKGIIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGLES 120 ISL I+HF G IPIFGVCLGHQ+I Q FGG+V+RAERLMHGKTS I H+G ++FEGL++ Sbjct: 61 ISLEAIKHFAGKIPIFGVCLGHQSIAQVFGGDVVRAERLMHGKTSDIEHDGKTIFEGLKN 120 Query: 121 PFTATRYHSLIVERETLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITNHGHTM 180 P ATRYHSLIV+ ETLP C +TA+T EGEIMA+RH + PIEGVQFHPESI+T+ G M Sbjct: 121 PLVATRYHSLIVKPETLPSCFTVTAQTKEGEIMAIRHNDLPIEGVQFHPESIMTSFGKEM 180 Query: 181 LRNFLKRRAGEPV 193 LRNF++ E + Sbjct: 181 LRNFIETYRKEVI 193 >ref|NP_654019.1| GATase, Glutamine amidotransferase class-I [Bacillus anthracis A2012] Length = 192 Score = 287 bits (735), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 127/186 (68%), Positives = 161/186 (86%) Query: 4 VIDNYDSFTYNLVQYLGELGEEVRVSRNDEITIEEIEAFAPDHILISPGPCTPNEAGISL 63 +IDNYDSFT+NLVQ+LGELG+E+ V RNDE+TI +IE PD ++ISPGPC+PNEAGIS+ Sbjct: 1 MIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGISM 60 Query: 64 ALIQHFKGIIPIFGVCLGHQAIGQAFGGNVIRAERLMHGKTSPIHHNGTSVFEGLESPFT 123 +I++F G IPIFGVCLGHQ+I Q FGG V+RAERLMHGKTSP+HH+G ++F + +PFT Sbjct: 61 DVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAERLMHGKTSPMHHDGKTIFSDIPNPFT 120 Query: 124 ATRYHSLIVERETLPDCLEITAETAEGEIMALRHKEYPIEGVQFHPESIITNHGHTMLRN 183 ATRYHSLIV++ETLPDCLE+T+ T EGEIMALRH PIEGVQFHPESI+T+HG +L+N Sbjct: 121 ATRYHSLIVKKETLPDCLEVTSWTEEGEIMALRHTTLPIEGVQFHPESIMTSHGKELLQN 180 Query: 184 FLKRRA 189 F+++ + Sbjct: 181 FIRKYS 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 291,789,030 Number of extensions: 11450256 Number of successful extensions: 47840 Number of sequences better than 1.0e-05: 1820 Number of HSP's gapped: 46119 Number of HSP's successfully gapped: 1820 Length of query: 193 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 74 Effective length of database: 434,140,797 Effective search space: 32126418978 Effective search space used: 32126418978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 122 (51.6 bits)