BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0060.0010.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00179938.1| hypothetical protein Mther217301 [Moorella th... 322 7e-87 ref|ZP_00060306.1| COG1521: Putative transcriptional regulator, ... 318 9e-86 gb|AAG28531.1| putative 32 kDa replication protein [Geobacillus ... 317 2e-85 ref|NP_240952.1| BH0086~unknown conserved protein [Bacillus halo... 315 8e-85 ref|NP_623916.1| putative transcriptional regulator, homologs of... 310 2e-83 >ref|ZP_00179938.1| hypothetical protein Mther217301 [Moorella thermoacetica ATCC 39073] Length = 254 Score = 322 bits (824), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 149/254 (58%), Positives = 200/254 (78%), Gaps = 1/254 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+LA+D+GNTNIVLG++ G EL H+R+++ RQ TADEYG+++ L H + ++++GV Sbjct: 1 MLLAIDVGNTNIVLGIFAGHELKCHWRVASDRQKTADEYGLILRQLAHYQGLDLKEIQGV 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 +++SVVP L QV+ EM K +G +PL++GPG+KTG+ +R+ENPREVGADRIVN VA E Sbjct: 61 VLASVVPTLTQVLTEMITKQLGHQPLVIGPGVKTGMPIRFENPREVGADRIVNGVAVYEL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y P +VVDFGTATTFD I YLGGAI PG+GI+T+AL+ RA+KLPR+EL +P ++I Sbjct: 121 YGGPAIVVDFGTATTFDAISEKGEYLGGAIAPGIGIATDALFARAAKLPRVELVRPPRLI 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NTV MQAGI++G+ GQVEGI+ R++AEM + V+ATGGLA LI E CID V+P Sbjct: 181 GKNTVACMQAGIMYGFIGQVEGIITRMQAEMGGKAI-VVATGGLAGLIGPEVNCIDRVDP 239 Query: 241 MLTLEGLRIIYDRN 254 MLTLEGLRI+Y+RN Sbjct: 240 MLTLEGLRIVYERN 253 >ref|ZP_00060306.1| COG1521: Putative transcriptional regulator, homolog of Bvg accessory factor [Clostridium thermocellum ATCC 27405] Length = 255 Score = 318 bits (814), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 150/255 (58%), Positives = 198/255 (77%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+L +D+GNTN V GVY G++LL+H+R+ T++ T+DEYG+ I +L I +E V Sbjct: 1 MILVIDVGNTNTVFGVYDGKKLLNHWRMETSKGKTSDEYGMFIVSLLSYEKIDVGKIEAV 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 +I+SVVPP++ + KY EP++VGPGIKTG+N++YENPREVGADRI+NAVAA+E Sbjct: 61 VIASVVPPIMYSLEHAIRKYFKLEPMVVGPGIKTGINIKYENPREVGADRIINAVAALEL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATTF + + YLGG I PG+ IS EAL+Q+ +KLP+I+L KP+ VI Sbjct: 121 YGGPLIIVDFGTATTFCAVSSKGEYLGGVICPGIKISAEALFQKTAKLPKIDLVKPETVI 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 GRNTV +MQ+GII+GY G+V+ IVRR+K EM +KVIATGGLA LIA E+E IDE+N Sbjct: 181 GRNTVSSMQSGIIYGYVGEVDYIVRRMKKEMKEDNIKVIATGGLARLIASESETIDEING 240 Query: 241 MLTLEGLRIIYDRNK 255 +LTLEGLRIIY+RNK Sbjct: 241 LLTLEGLRIIYERNK 255 >gb|AAG28531.1| putative 32 kDa replication protein [Geobacillus stearothermophilus] Length = 258 Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 1/254 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+ +D+GNTN VLGVY G EL HH+R+ T+R T DEYG+ I L + + F D++G+ Sbjct: 1 MIFVLDVGNTNTVLGVYDGDELKHHWRIETSRGKTEDEYGMTIKALLNHVGLQFSDIDGI 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPP++ + MC+KY +P++VGPGIKTGLN++Y+NPREVGADRIVNAVA I Sbjct: 61 IISSVVPPIMFALERMCLKYFHIKPIIVGPGIKTGLNIKYDNPREVGADRIVNAVAGIHL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y PL++VDFGTATT+ I+ Y+GGAI PG+ ISTEAL+ RA+KLPRIE+ +P +I Sbjct: 121 YGSPLIIVDFGTATTYCYINEHKQYMGGAIAPGIMISTEALFARAAKLPRIEIARPDDII 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G+NTV AMQAGI++GY GQVEGIV R+KA+ P KVIATGGLA+LIA E+ ID V+P Sbjct: 181 GKNTVSAMQAGILYGYVGQVEGIVSRMKAKSPVPP-KVIATGGLASLIASESNVIDIVDP 239 Query: 241 MLTLEGLRIIYDRN 254 LTL GL+I+Y++N Sbjct: 240 FLTLTGLKILYEKN 253 >ref|NP_240952.1| BH0086~unknown conserved protein [Bacillus halodurans] pir||F83660 hypothetical protein BH0086 [imported] - Bacillus halodurans (strain C-125) dbj|BAB03805.1| BH0086 [Bacillus halodurans] Length = 254 Score = 315 bits (806), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 145/254 (57%), Positives = 198/254 (77%), Gaps = 1/254 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+L +D+GNTN VLGVY+ L+HH+RL+T+RQ T DEY + + +LF + + F+D++G+ Sbjct: 1 MILVIDVGNTNTVLGVYQDETLVHHWRLATSRQKTEDEYAMTVRSLFDHAGLQFQDIDGI 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 +ISSVVPP++ + +MC KY P+++GPGIKTGLN++Y+NP+EVGADRIVNAVAAIE Sbjct: 61 VISSVVPPMMFSLEQMCKKYFHVTPMIIGPGIKTGLNIKYDNPKEVGADRIVNAVAAIEL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y P +VVDFGTATT+ I+ Y GG I PG+ ISTEALY RASKLPRIE+ KPK+V+ Sbjct: 121 YGYPAIVVDFGTATTYCLINEKKQYAGGVIAPGIMISTEALYHRASKLPRIEIAKPKQVV 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 G NT+ +MQ+GI +GY QV+G+V+R+KA+ + KVIATGGLA LI E+E ID ++ Sbjct: 181 GTNTIDSMQSGIFYGYVSQVDGVVKRMKAQAESEP-KVIATGGLAKLIGTESETIDVIDS 239 Query: 241 MLTLEGLRIIYDRN 254 LTL+GL++IY +N Sbjct: 240 FLTLKGLQLIYKKN 253 >ref|NP_623916.1| putative transcriptional regulator, homologs of Bvg accessory factor [Thermoanaerobacter tengcongensis] gb|AAM25520.1| putative transcriptional regulator, homologs of Bvg accessory factor [Thermoanaerobacter tengcongensis] Length = 255 Score = 310 bits (794), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 150/255 (58%), Positives = 196/255 (76%), Gaps = 1/255 (0%) Query: 1 MMLAVDIGNTNIVLGVYRGRELLHHFRLSTARQSTADEYGVLIHNLFHMSNISFRDVEGV 60 M+LA D+GNTNIV+GV++G++LLH FR+ST + T DEYG+L++ L + IS +++ V Sbjct: 1 MLLAFDVGNTNIVMGVFKGKKLLHSFRISTDKNKTYDEYGMLVNQLIGYNGISLTEIDDV 60 Query: 61 IISSVVPPLVQVIVEMCVKYIGKEPLLVGPGIKTGLNLRYENPREVGADRIVNAVAAIEQ 120 IISSVVPPL+ + M +KY +P++VGPGIKTG+N++Y+NP+EVGADRIVNAVAA E Sbjct: 61 IISSVVPPLMNTLQVMSLKYFRTKPIVVGPGIKTGINIKYDNPKEVGADRIVNAVAAYEL 120 Query: 121 YQCPLVVVDFGTATTFDCIDAGANYLGGAIVPGLGISTEALYQRASKLPRIELEKPKKVI 180 Y P++V+DFGTATTF I YLGG I PGL IS +AL+QR +KLP+I+L KP VI Sbjct: 121 YGGPVIVIDFGTATTFCAISEKGEYLGGIIAPGLMISADALFQRTAKLPKIDLTKPPTVI 180 Query: 181 GRNTVHAMQAGIIFGYAGQVEGIVRRIKAEMNAPVLKVIATGGLATLIAGETECIDEVNP 240 RNTV +MQ+GII+G+ G V+ IV R+K E AP V+ATGG A +IA E++ ID VN Sbjct: 181 NRNTVASMQSGIIYGHVGMVDYIVTRMKGEF-APSAYVVATGGFANMIAEESKTIDTVNE 239 Query: 241 MLTLEGLRIIYDRNK 255 MLTLEGLRIIY+RNK Sbjct: 240 MLTLEGLRIIYERNK 254 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.141 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 366,800,863 Number of extensions: 14726616 Number of successful extensions: 32849 Number of sequences better than 1.0e-05: 314 Number of HSP's gapped: 32430 Number of HSP's successfully gapped: 314 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 124 (52.4 bits)