BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0060.0001.p
         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_976397.1| 4-amino-4-deoxychorismate lyase PabC [Bacillus ...    67   1e-10
ref|NP_240958.1| 4-amino-4-deoxychorismate lyase [Bacillus halod...    66   2e-10
ref|NP_387957.1| aminodeoxychorismate lyase [Bacillus subtilis] ...    65   4e-10
ref|NP_654020.1| aminotran_4, Aminotransferase class IV [Bacillu...    65   4e-10
ref|NP_829973.1| 4-amino-4-deoxychorismate lyase [Bacillus cereu...    65   5e-10

>ref|NP_976397.1| 4-amino-4-deoxychorismate lyase PabC [Bacillus cereus ATCC 10987]
 gb|AAS39005.1| 4-amino-4-deoxychorismate lyase PabC [Bacillus cereus ATCC 10987]
          Length = 290

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/50 (60%), Positives = 35/50 (70%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRLV 53
          I  N Q V+A  A IS  DHG+LYG+G+FETFR Y G PFLL  H DRL+
Sbjct: 3  IYVNGQYVEASEARISPYDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLI 52


>ref|NP_240958.1| 4-amino-4-deoxychorismate lyase [Bacillus halodurans]
 pir||D83661 4-amino-4-deoxychorismate lyase pabC [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB03811.1| 4-amino-4-deoxychorismate lyase [Bacillus halodurans]
          Length = 295

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query: 3  YIGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          Y+  N ++V  + A+IS  DHG++YG+GLFETFR Y+G PFLL  H  RL
Sbjct: 2  YMYVNDKLVKEEEAIISPFDHGYMYGLGLFETFRLYEGHPFLLDDHFVRL 51


>ref|NP_387957.1| aminodeoxychorismate lyase [Bacillus subtilis]
 sp|P28821|PABC_BACSU Aminodeoxychorismate lyase (4-amino-4-deoxychorismate lyase) (ADC
          lyase) (ADCL)
 pir||C37854 aminodeoxychorismate lyase pabC - Bacillus subtilis
 gb|AAA22696.1| pot. p-aminobenzoate synthesis enzyme (pabC); putative
 dbj|BAA05311.1| enzyme required for para-aminobenzoate [Bacillus subtilis]
 emb|CAB11852.1| aminodeoxychorismate lyase [Bacillus subtilis subsp. subtilis
          str. 168]
          Length = 293

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 38/49 (77%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRL 52
          I  N + ++ K+AV+S  DHGFLYG+G+FETFR Y+G PFLL  H++RL
Sbjct: 2  IYVNGRYMEEKDAVLSPFDHGFLYGIGVFETFRLYEGCPFLLDWHIERL 50


>ref|NP_654020.1| aminotran_4, Aminotransferase class IV [Bacillus anthracis A2012]
 ref|NP_842639.1| 4-amino-4-deoxychorismate lyase PabC [Bacillus anthracis str.
          Ames]
 gb|AAP24125.1| 4-amino-4-deoxychorismate lyase PabC [Bacillus anthracis str.
          Ames]
          Length = 290

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 34/50 (68%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRLV 53
          I  N Q V +  A IS  DHG+LYG+G+FETFR Y G PFLL  H DRL+
Sbjct: 3  IYVNGQYVKSSEARISPYDHGYLYGLGVFETFRIYNGHPFLLDDHYDRLI 52


>ref|NP_829973.1| 4-amino-4-deoxychorismate lyase [Bacillus cereus ATCC 14579]
 gb|AAP07174.1| 4-amino-4-deoxychorismate lyase [Bacillus cereus ATCC 14579]
          Length = 290

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 35/50 (70%)

Query: 4  IGFNHQVVDAKNAVISALDHGFLYGMGLFETFRTYKGEPFLLQRHLDRLV 53
          I  N Q V+A  A IS  DHG+LYG+G+FETFR Y G PFLL  H +RL+
Sbjct: 3  IYVNGQYVEASEARISPYDHGYLYGLGVFETFRIYNGHPFLLDDHYNRLI 52


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.331    0.148    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 101,394,841
Number of extensions: 3325953
Number of successful extensions: 8322
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 8326
Number of HSP's successfully gapped: 17
Length of query: 69
Length of database: 757,237,578
Length adjustment: 40
Effective length of query: 29
Effective length of database: 648,633,618
Effective search space: 18810374922
Effective search space used: 18810374922
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 120 (50.8 bits)