BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0058.0004.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694363.1| ribosomal-protein-serine N-acetyltransferase [O... 171 9e-42 ref|NP_645135.1| ORFID:MW0318~hypothetical protein, similar to r... 161 7e-39 ref|NP_370866.1| hypothetical protein [Staphylococcus aureus sub... 161 7e-39 ref|NP_765947.1| ribosomal-protein-serine N-acetyltransferase [S... 147 8e-35 ref|NP_981118.1| ribosomal-protein-serine acetyltransferase, put... 147 1e-34 >ref|NP_694363.1| ribosomal-protein-serine N-acetyltransferase [Oceanobacillus iheyensis HTE831] dbj|BAC15397.1| ribosomal-protein-serine N-acetyltransferase [Oceanobacillus iheyensis HTE831] Length = 182 Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 81/178 (45%), Positives = 112/178 (62%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF+YVID ++KL+ L + A+ MF +V+ SR LR+WLPWVD + FI S+R Sbjct: 1 MFSYVIDNQIKLRQLKLKDAKNMFNVVDESRDYLREWLPWVDTTKKAEDCLAFIDQSIRN 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 + GI+V ++ AG++G++ DWHN+ IGYWL Y+G G MT++ R +D Sbjct: 61 AENQRALTLGIFVEKKFAGLVGFNYFDWHNKIAPIGYWLAPQYQGNGIMTTSVRSLIDIG 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEW 178 E+ LNR+EIR A N+ SR+IPERL F EG+IRQ E L YV+ +YG L SEW Sbjct: 121 FHEIGLNRIEIRAAVQNQKSRSIPERLDFKEEGLIRQGEWLYDHYVDLIMYGKLASEW 178 >ref|NP_645135.1| ORFID:MW0318~hypothetical protein, similar to ribosomal-protein-serine N-acetyltransferase [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94183.1| MW0318 [Staphylococcus aureus subsp. aureus MW2] Length = 181 Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 78/178 (43%), Positives = 105/178 (58%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF ++E++ LK+L +F LV RSR LR+WLPWVD + + FIK + Q Sbjct: 1 MFGMKVNEQIILKILEAHDTEALFNLVNRSRNSLREWLPWVDATEQPSDTRAFIKRGLLQ 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 S+ GF GIW L G+IG HEI+ +R +GY+L + +EG G MT A + Y Sbjct: 61 FSDGNGFQCGIWYEGTLVGVIGLHEINRMHRKTSLGYYLDKQFEGHGIMTQAVEALIKYC 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEW 178 E+DLNR+EI A N SRAIPERLGF EG++R E L Y + +Y LL+SE+ Sbjct: 121 FEELDLNRIEISAAVNNEKSRAIPERLGFTREGMLRDNELLNGIYSSSYIYSLLKSEY 178 >ref|NP_370866.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373576.1| hypothetical protein, similar to ribosomal-protein-serine N-acetyltransferase [Staphylococcus aureus subsp. aureus N315] pir||G89799 hypothetical protein SA0330 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41554.1| SA0330 [Staphylococcus aureus subsp. aureus N315] dbj|BAB56504.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 181 Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 77/178 (43%), Positives = 105/178 (58%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF ++E++ LK+L +F LV RSR LR+WLPWVD + + FIK + Q Sbjct: 1 MFGMKVNEQITLKILEAHDTEALFNLVNRSRNSLREWLPWVDATEQPSDTRAFIKRGLLQ 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 ++ GF GIW L G+IG HEI+ +R +GY+L + +EG G MT A + Y Sbjct: 61 FADGNGFQCGIWYEGTLVGVIGLHEINHMHRKTSLGYYLDKQFEGHGIMTQAVEALIKYC 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEW 178 E+DLNR+EI A N SRAIPERLGF EG++R E L Y + +Y LL+SE+ Sbjct: 121 FEELDLNRIEISAAVNNEKSRAIPERLGFTREGMLRDNELLNGIYSSSYIYSLLKSEY 178 >ref|NP_765947.1| ribosomal-protein-serine N-acetyltransferase [Staphylococcus epidermidis ATCC 12228] gb|AAO06035.1| ribosomal-protein-serine N-acetyltransferase [Staphylococcus epidermidis ATCC 12228] Length = 182 Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 70/177 (39%), Positives = 109/177 (61%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF+Y I++ +KLK+L A +F LV+ +R L ++LP+V+ + + FI ++++Q Sbjct: 1 MFSYQINKNIKLKILEEREAEQLFKLVDSNRDYLAEFLPFVEHTKKVEDSKHFIHSALQQ 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 + GF GIW +EL G+IG H +D N++ IGY+L E ++ KG MT + + Y Sbjct: 61 FIDGNGFHCGIWSNKELIGVIGLHYLDLVNKTTSIGYYLAEDFQKKGIMTKCTKALIRYV 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSE 177 D+NR+EIR +T N+ SRAIP RLGF EG++R E+L + + V+ LLR E Sbjct: 121 YEVYDINRIEIRMSTKNKKSRAIPIRLGFTQEGILRSNERLQGEFSDSYVFSLLREE 177 >ref|NP_981118.1| ribosomal-protein-serine acetyltransferase, putative [Bacillus cereus ATCC 10987] gb|AAS43726.1| ribosomal-protein-serine acetyltransferase, putative [Bacillus cereus ATCC 10987] Length = 182 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 106/179 (59%) Query: 1 MFNYVIDEELKLKLLMPEHARPMFALVERSRARLRQWLPWVDGVTEQAHLETFIKNSVRQ 60 MF +D+E++L+LL H ++ L+ ++R LR+WLPWVDG +++ Sbjct: 1 MFTLRVDDEIELQLLEKHHKEELYQLINQNRNHLRRWLPWVDGTKSADAYNEICPMWLKK 60 Query: 61 GSENGGFSAGIWVREELAGIIGYHEIDWHNRSVGIGYWLGEGYEGKGYMTSACRVFVDYA 120 +E GF +GI + +L G++G H + W ++ +GY+L E GKG MT + + + YA Sbjct: 61 FAEGDGFESGIRYKGKLVGMVGIHPVSWGKKAASLGYYLAEDAGGKGIMTRSVKAVLHYA 120 Query: 121 LLEMDLNRVEIRCATGNRTSRAIPERLGFVFEGVIRQAEKLPSGYVNHAVYGLLRSEWK 179 + LN++EIRC N SRAIPERLGF +GV+R E L + + AVY LL SEWK Sbjct: 121 FENLKLNKMEIRCGVENVKSRAIPERLGFKLDGVLRDEEWLYDHFHDVAVYSLLASEWK 179 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.140 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 297,105,756 Number of extensions: 12113787 Number of successful extensions: 21447 Number of sequences better than 1.0e-05: 192 Number of HSP's gapped: 21463 Number of HSP's successfully gapped: 192 Length of query: 182 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 64 Effective length of database: 436,855,896 Effective search space: 27958777344 Effective search space used: 27958777344 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)