BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0058.0003.p
         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_833365.1| hypothetical Cytosolic Protein [Bacillus cereus...    62   5e-09
ref|NP_657540.1| hypothetical protein predicted by GeneMark [Bac...    61   7e-09
ref|NP_979962.1| conserved hypothetical protein [Bacillus cereus...    60   1e-08
gb|EAI95435.1| unknown [environmental sequence]                        57   1e-07
gb|EAE85317.1| unknown [environmental sequence]                        56   3e-07

>ref|NP_833365.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
 gb|AAP10566.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579]
          Length = 82

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 49/77 (63%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  IK+P +++E +   I+ +F  E  + IG   A+ L+E  ++ +GP  YN A+GD R 
Sbjct: 1  MMNIKIPNDKKEELVAQIQQFFMEEDLDEIGRFQAERLIEEMIKLVGPFAYNQAIGDARK 60

Query: 69 LVGQRMQSLEDDIYALE 85
          LV +++ ++E+D+Y LE
Sbjct: 61 LVSEKLTNMEEDLYVLE 77


>ref|NP_657540.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_845960.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP27446.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 82

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 49/77 (63%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  IK+P +++E +   I+ +F  E  + IG   A+ L+E  ++ +GP  YN A+GD R 
Sbjct: 1  MMNIKIPNDKKEELVAQIQQFFVEEDLDEIGRFQAERLIEEMIKLVGPFAYNQAIGDARK 60

Query: 69 LVGQRMQSLEDDIYALE 85
          LV +++ ++E+D+Y LE
Sbjct: 61 LVTEKLSNIEEDLYVLE 77


>ref|NP_979962.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS42570.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 82

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 49/77 (63%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  IK+P +++E +   I+ +F  E  + IG   A+ L+E  ++ +GP  YN A+GD R 
Sbjct: 1  MMNIKIPNDKKEELVAQIQQFFVEEDLDEIGRFQAERLIEEMIKLVGPFAYNQAIGDARK 60

Query: 69 LVGQRMQSLEDDIYALE 85
          LV +++ ++E+D+Y LE
Sbjct: 61 LVIEKLSNIEEDLYVLE 77


>gb|EAI95435.1| unknown [environmental sequence]
          Length = 80

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  I   +E+++ +   +R YF+ E    +G    + LL+F  +E+G + YN  + D R 
Sbjct: 1  MSDIAFTREEKDALVAKLRRYFDDELSVELGQFDGEFLLDFISKEMGASFYNKGVNDARA 60

Query: 69 LVGQRMQSLEDDIYALE 85
          +V  R+Q +++++YA+E
Sbjct: 61 VVASRLQVIDEELYAIE 77


>gb|EAE85317.1| unknown [environmental sequence]
          Length = 80

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 45/77 (58%)

Query: 9  MKPIKLPKEQREIITENIRAYFEAERGESIGHLAADNLLEFFLQELGPAIYNGALGDCRT 68
          M  I   +E+++ +   ++ YF+ E    +G    + LL+F  +E+G + YN  + D R 
Sbjct: 1  MSDIAFTREEKDALVSKLQRYFDDELSVELGQFDGEFLLDFISKEMGASFYNKGVNDARA 60

Query: 69 LVGQRMQSLEDDIYALE 85
          +V  R+Q +++++YA+E
Sbjct: 61 VVASRLQVIDEELYAIE 77


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.321    0.141    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 131,476,722
Number of extensions: 4390316
Number of successful extensions: 8923
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 8923
Number of HSP's successfully gapped: 6
Length of query: 89
Length of database: 757,237,578
Length adjustment: 58
Effective length of query: 31
Effective length of database: 599,761,836
Effective search space: 18592616916
Effective search space used: 18592616916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)