BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0019.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00080808.1| COG2378: Predicted transcriptional regulator ... 117 3e-25 ref|NP_951532.1| transcriptional regulator, putative [Geobacter ... 104 2e-21 ref|NP_942253.1| sll5097 [Synechocystis sp. PCC 6803] >gi|384236... 100 4e-20 ref|NP_978994.1| conserved hypothetical protein [Bacillus cereus... 92 2e-17 ref|NP_832425.1| Transcriptional regulator, DeoR family [Bacillu... 91 2e-17 >ref|ZP_00080808.1| COG2378: Predicted transcriptional regulator [Geobacter metallireducens] Length = 334 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/316 (29%), Positives = 152/316 (48%), Gaps = 34/316 (10%) Query: 7 RIFKIINAIQSNPGITASALAIRCDVNIRTVYRDLEIISHFA-PVTNE---GRGTGYKFL 62 R+ +I I++ G+T +A V+ RTV+RDL +I P+ +E GR Y+FL Sbjct: 15 RVHDLIRLIEARHGVTLDEMAEETGVDRRTVHRDLNVIHEAGYPLISEWLNGR-KAYRFL 73 Query: 63 GKFF-LYPLDFSEQEALAFSLLPSFLN-QDKIPPGFHTAYDKVMGTHLKEKSKQNGIL-- 118 +F + P+ F+ QE +A S S L+ D P F D V K N +L Sbjct: 74 TRFKDVPPITFTLQELMALSFFRSQLSFLDGTP--FREDLDAVF-------RKINSVLPP 124 Query: 119 ------ENIADI---IQMGKPAYRKKSRNFLQPIIGAILEQRSIRAIYHSQSRNALTQRE 169 E IAD+ + G+ Y + L+ + A++ Q +R Y + + E Sbjct: 125 RYAAHMERIADVSLPLLQGRRDYAPVA-GHLESLRDALIYQYRVRLSYRGAGKGRASTYE 183 Query: 170 IDPYYLIPRDQRFYLIGYCHLKQAIRTFRISRFQEVEVTDRSFD-KGNFNIKKYLKNTWS 228 +DPY L+ YL+GY H +QA+RTF R VEV F+ ++ ++ L+ + Sbjct: 184 VDPYTLVFYKGGLYLVGYAHNRQALRTFAAERITGVEVRKERFEIPADYRPEERLRGAFG 243 Query: 229 IDRGNKNIKFRVRFHPEIARYIKEEELFVHPWMSDEN--DGSLLFEVTVNNEKEFTKWIL 286 I + ++ +RF P +A ++ HP ++ + DGSL+ T + E W+L Sbjct: 244 IVE-EEPLEVMIRFSPGVAHAVRGR--VWHPSQTERSGADGSLVLSFTAGGKMEIVSWVL 300 Query: 287 QYGPNAEILEPASARE 302 YG +AE+L PAS R+ Sbjct: 301 SYGEHAEVLAPASLRD 316 >ref|NP_951532.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] gb|AAR33805.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 334 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 79/306 (25%), Positives = 146/306 (47%), Gaps = 18/306 (5%) Query: 4 KVIRIFKIINAIQSNPGITASALAIRCDVNIRTVYRDLEIISHFA-PVTNE---GRGTGY 59 + R+ +I I++ G+T + +A V+ RT++RDL I P+ ++ GR Y Sbjct: 12 QAARVHDLIRLIEARHGVTIAEMAEETGVDRRTIHRDLAAIHEAGYPLISDWEDGRKV-Y 70 Query: 60 KFLGKFF-LYPLDFSEQEALAFSLLPS---FLNQDKIPPGFHTAYDKVMGTHLKEKSKQN 115 +F+ +F + P+ F+ QE +A S + FL+ + KV + Sbjct: 71 RFITRFRDVPPITFTLQELVALSFFRTQLHFLDGTPFREDLDAVFRKVSSVLPPRYAAH- 129 Query: 116 GILENIADI---IQMGKPAYRKKSRNFLQPIIGAILEQRSIRAIYHSQSRNALTQREIDP 172 +E IA++ + G+ Y + + L+ + A++ Q +R Y ++ + E+DP Sbjct: 130 --MERIAEVSVPLLQGRRDYSRVG-DGLRSLRDALIYQYRVRLSYQAKGQGRPALYEVDP 186 Query: 173 YYLIPRDQRFYLIGYCHLKQAIRTFRISRFQEVEVTDRSFD-KGNFNIKKYLKNTWSIDR 231 Y L+ YL+GY H ++A+RTF R VEVT F+ ++ + L++ + I Sbjct: 187 YTLVFYKGGLYLVGYAHNRRALRTFAAERITAVEVTRDRFEIPDDYRPSERLRDAFGIVE 246 Query: 232 GNKNIKFRVRFHPEIARYIKEEELFVHPWMSDENDGSLLFEVTVNNEKEFTKWILQYGPN 291 + + +RF PE+A +++ + E+DG+ + T E W+L YG + Sbjct: 247 -EEPLSVAIRFSPELAHTVRDRIWHPTQQVRMESDGACILSFTAGGRMEIIAWVLSYGAH 305 Query: 292 AEILEP 297 AE+L P Sbjct: 306 AEVLSP 311 >ref|NP_942253.1| sll5097 [Synechocystis sp. PCC 6803] dbj|BAD01867.1| sll5097 [Synechocystis sp. PCC 6803] Length = 334 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 145/319 (45%), Gaps = 26/319 (8%) Query: 7 RIFKIINAIQSNPGITASALAIRCDVNIRTVYRDLEII-SHFAPVTNEGRGTGYKFLGKF 65 R+ I I+S TA +A + V RT+ D + F + GY + Sbjct: 14 RLLAIDEYIRSPIRYTAKVIAEKLSVAERTIRLDFAFLRDRFNAPIQFNQSKGYYYSDNT 73 Query: 66 FLYP-LDFSEQEALAFSLLPSFLNQDKIPPGFHTAYD-------KVMGTHLKEKSKQNGI 117 + P + ++ E A +L L TAY+ K + T L EK N Sbjct: 74 WRLPTIPLTQGELFALTLGAKALEAYS-----GTAYEAELKSSIKQLATRLPEKVWVN-- 126 Query: 118 LENIADIIQMGKPAYRKKSRNFLQPIIGAILEQ-----RSIRAIYHSQSRNALTQREIDP 172 LE + D +P + L P I IL + R + Y++ RN ++R +DP Sbjct: 127 LEKLVDEKINFRPGAELLN---LDPDIYQILHEAWKSSRQLWIRYYTAGRNEESERIVDP 183 Query: 173 YYL-IPRDQRFYLIGYCHLKQAIRTFRISRFQEVEVTDRSFDKG-NFNIKKYLKNTWSID 230 YYL I R YL+ +CH +QA R FR+ R +E + D F+ NF+ KKY KN + I+ Sbjct: 184 YYLDIYRGSNPYLVAFCHNRQAFREFRLDRIREYRILDEYFEPNPNFDWKKYSKNAFQIE 243 Query: 231 RGNKNIKFRVRFHPEIARYIKEEELFVHPWMSDENDGSLLFEVTVNNEKEFTKWILQYGP 290 +GN + + F ++A YI+E + + + +DGSL + V +E +W+L YG Sbjct: 244 KGNCLHEVVIDFTCKVAPYIREWKWHHSQVIDEHHDGSLTLHLEVGGLQEVKRWVLGYGK 303 Query: 291 NAEILEPASAREGLKVQLE 309 +A + P + L+ + E Sbjct: 304 DALVKSPPELVKLLQEETE 322 >ref|NP_978994.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41602.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 320 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 159/333 (47%), Gaps = 36/333 (10%) Query: 4 KVIRIFKIINAIQSNPGITASALAIRCDVNIRTVYRDLEIISHFA-PVTNE-GRGTGYKF 61 K+ + I+ ++S ITA ++ + ++NIRTVYR ++ IS P+ +E G GY Sbjct: 3 KIDNMLAILWMLRSGKKITAKQISEKLEINIRTVYRYIDTISTSGVPIISEPGHNGGYTL 62 Query: 62 LGKFFLYPL--DFSEQEALAFSLLPSFLNQDKIPPG--FHTAYDKVMG-THLKEKSKQNG 116 L F PL DF EQ +L + + F + G + A K+ ++ ++++K N Sbjct: 63 LNNFIEAPLFFDFEEQTSLFHAAV--FAEEAGYYGGEALNRAISKLSKYSNQEQETKINQ 120 Query: 117 ILENIADIIQMGKPAYRKKSRNFLQPIIGAILEQRSIRAIYHSQSRNALTQREIDPYYLI 176 L ++ I ++ + FL+ + A+ + S++ +YH L R ++PY +I Sbjct: 121 HLTSLEVISRLTSLSIE----TFLKELERAVADGYSVKILYHKSGEKQLNYRLVNPYRII 176 Query: 177 PRDQRFYLIGYCHLKQAIRTFRISRFQEVEVTD------RSFDKGNFNIKKYL------K 224 + ++Y+IG+CHL+ IR FR+ R + + +T+ +F +F IK L + Sbjct: 177 YWNNKWYVIGFCHLRNDIRIFRVDRIESLTLTENKFKQLENFSASDFFIKSLLLTIEDKE 236 Query: 225 NTWS-IDRGNKNIKFRVRFHPEIARYIKEEELFVHPWMSDENDGSLLFEVTVNNEKEFTK 283 N S + G+KN+ + H + Y++E N L E + + K Sbjct: 237 NIISLVINGDKNVLADICQHWFLGHYLQER---------TSNQAVFLLEKDIIH-KYVPY 286 Query: 284 WILQYGPNAEILEPASAREGLKVQLEQWMRLYQ 316 +L Y + +++EP S + L L + ++ +Q Sbjct: 287 LLLPYNKSIKVIEPISLKNRLIEVLSELIKFHQ 319 >ref|NP_832425.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] gb|AAP09626.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] Length = 320 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 161/333 (48%), Gaps = 36/333 (10%) Query: 4 KVIRIFKIINAIQSNPGITASALAIRCDVNIRTVYRDLEIISHFA-PVTNE-GRGTGYKF 61 K+ + I+ ++S ITA ++ + ++NIRTVYR ++ IS P+ +E G GY Sbjct: 3 KIDNMLAILWMLRSGEKITAKQISEKLEMNIRTVYRYIDTISTSGVPIISEPGHNGGYTL 62 Query: 62 LGKFFLYPL--DFSEQEALAFSLLPSFLNQDKIPPG--FHTAYDKVMG-THLKEKSKQNG 116 L F PL DF EQ +L + + F + G + A K+ ++ ++++K N Sbjct: 63 LNNFIEAPLFFDFEEQTSLFHAAV--FAEEAGYYGGEALNRAISKLSKYSNQEQETKINQ 120 Query: 117 ILENIADIIQMGKPAYRKKSRNFLQPIIGAILEQRSIRAIYHSQSRNALTQREIDPYYLI 176 L ++ I ++ + FL+ + A+ + S++ +YH L R +DPY +I Sbjct: 121 HLTSLEVISRLSPLSIE----TFLKELEQAVADGYSVKILYHKNGEKKLNYRLVDPYRII 176 Query: 177 PRDQRFYLIGYCHLKQAIRTFRISRFQEVEVTDRSFDKG------NFNIKKYL------K 224 + ++Y+IG+CHL+ IR+FR+ R + + +T+ F++ +F IK L K Sbjct: 177 YWNNKWYVIGFCHLRNDIRSFRVDRIESLMLTENKFNRPENFSARDFFIKSLLPTIEDKK 236 Query: 225 NTWS-IDRGNKNIKFRVRFHPEIARYIKEEELFVHPWMSDENDGSLLFEVTVNNEKEFTK 283 + S + G+KN+ + H + Y++E N L E + + Sbjct: 237 DIISLVINGDKNVLADICQHWFLGHYLQER---------TSNQAVFLLEKDMIH-TYVPY 286 Query: 284 WILQYGPNAEILEPASAREGLKVQLEQWMRLYQ 316 +L Y + +++EP S ++ L L + ++ +Q Sbjct: 287 LLLPYNKSIKVIEPISLKKRLIEVLSELIKFHQ 319 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 489,176,411 Number of extensions: 21478141 Number of successful extensions: 43096 Number of sequences better than 1.0e-05: 77 Number of HSP's gapped: 43052 Number of HSP's successfully gapped: 77 Length of query: 317 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 192 Effective length of database: 417,850,203 Effective search space: 80227238976 Effective search space used: 80227238976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)