BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0018.p (486 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388762.1| vegetative catalase 1 [Bacillus subtilis] >gi|3... 867 0.0 dbj|BAB21251.1| catalase [Bacillus subtilis] 865 0.0 pir||JH0532 catalase (EC 1.11.1.6), vegetative - Bacillus subtil... 862 0.0 ref|NP_691554.1| catalase [Oceanobacillus iheyensis HTE831] >gi|... 779 0.0 ref|NP_815312.1| catalase/peroxidase [Enterococcus faecalis V583... 671 0.0 >ref|NP_388762.1| vegetative catalase 1 [Bacillus subtilis] sp|P26901|CATA_BACSU Vegetative catalase emb|CAB04807.1| catalase [Bacillus subtilis] emb|CAB12710.1| vegetative catalase 1 [Bacillus subtilis subsp. subtilis str. 168] Length = 483 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/480 (86%), Positives = 439/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+G VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA+TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M G+NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH DHYTQ Sbjct: 362 NNYQRDGQMRFGDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >dbj|BAB21251.1| catalase [Bacillus subtilis] Length = 483 Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/480 (85%), Positives = 438/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+G VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEGEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDAKTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M +NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH+DHYTQ Sbjct: 362 NNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHNDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >pir||JH0532 catalase (EC 1.11.1.6), vegetative - Bacillus subtilis gb|AAA22402.1| vegetative catalase Length = 483 Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/480 (85%), Positives = 437/480 (91%) Query: 4 SPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAH 63 S NKLTTSWGAPVGDNQNSMTAGSRGPTL+QDVHLLEKLAHFNRERVPERVVHAKGAGAH Sbjct: 2 SSNKLTTSWGAPVGDNQNSMTAGSRGPTLIQDVHLLEKLAHFNRERVPERVVHAKGAGAH 61 Query: 64 GYFEVTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 123 GYFEVT D++KYTKAAFLSEVGKRTP+FIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN Sbjct: 62 GYFEVTNDVTKYTKAAFLSEVGKRTPLFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGN 121 Query: 124 YDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSD 183 YD+VGNNTPVFFIRDAIKFPDFIHTQKR P+THLKNP AVWDFWSLSPESLHQVTILMSD Sbjct: 122 YDIVGNNTPVFFIRDAIKFPDFIHTQKRDPKTHLKNPTAVWDFWSLSPESLHQVTILMSD 181 Query: 184 RGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHT 243 RGIPATLRHMHGFGSHTFKW NA+ VW+KYHFKTEQGVKNLDV AA+IAGENPDYHT Sbjct: 182 RGIPATLRHMHGFGSHTFKWTNAEPEGVWIKYHFKTEQGVKNLDVNTAAKIAGENPDYHT 241 Query: 244 EDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 303 EDLFNAI+ GD+PAW+LYVQIMP+EDA+TYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP Sbjct: 242 EDLFNAIENGDYPAWKLYVQIMPLEDANTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNP 301 Query: 304 ENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEV 363 ENYFAEVEQATFSPG+ VPGI+ SPDKMLQGRLFAY DAHRYRVGANH LPINR +V Sbjct: 302 ENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKV 361 Query: 364 NNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDHYTQP 423 NN QRDG M +NGGGSVYYEPNSFGG ESP K AA+ V G ADSV YDH DHYTQ Sbjct: 362 NNYQRDGQMRFDDNGGGSVYYEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQA 421 Query: 424 GDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGLTVPQ 483 GDLYRL+SE+ER RLV NIV AM PVEK+EIKLRQI HFYKADPE+G+RVA GLGL + + Sbjct: 422 GDLYRLMSEDERTRLVENIVNAMKPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGLPIKK 481 >ref|NP_691554.1| catalase [Oceanobacillus iheyensis HTE831] dbj|BAC12589.1| catalase [Oceanobacillus iheyensis HTE831] Length = 487 Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/484 (77%), Positives = 412/484 (85%), Gaps = 1/484 (0%) Query: 1 MSESPNKLTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGA 60 MS N LTT+ GAPVGDNQNS+TAG GPTLLQD HLLEKLAHFNRER+PERVVHAKGA Sbjct: 1 MSNKRNTLTTASGAPVGDNQNSITAGHNGPTLLQDFHLLEKLAHFNRERIPERVVHAKGA 60 Query: 61 GAHGYFEVTQD-LSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYT 119 GAHGYFEVT D +SKYTKA FLSE GKRT MFIRFSTVAGE GSADTVRDPRGFAVKFYT Sbjct: 61 GAHGYFEVTNDEISKYTKADFLSEKGKRTDMFIRFSTVAGEQGSADTVRDPRGFAVKFYT 120 Query: 120 EEGNYDLVGNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTI 179 EEGNYDLVGNNTP+FFIRDAIKFPDFIHTQKR+PQTHLK+ + VWDFWSLSPESLHQVT Sbjct: 121 EEGNYDLVGNNTPIFFIRDAIKFPDFIHTQKRNPQTHLKDKDMVWDFWSLSPESLHQVTY 180 Query: 180 LMSDRGIPATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENP 239 L SDRG+PATLRHM+G+GSHTFKWVNA+G A WVKYHF +EQG+KNLD LA +IAGENP Sbjct: 181 LHSDRGLPATLRHMNGYGSHTFKWVNAEGEAFWVKYHFISEQGIKNLDPALADKIAGENP 240 Query: 240 DYHTEDLFNAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVL 299 DYHTEDLFNAI++GD PAW+LYVQIMP EDA TY++DPFDVTK+WS+KDYP IEVGRMVL Sbjct: 241 DYHTEDLFNAIEEGDHPAWKLYVQIMPYEDAKTYKWDPFDVTKIWSKKDYPRIEVGRMVL 300 Query: 300 DRNPENYFAEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRP 359 DRNPENYFAEVEQA FSPG FVPGIEASPDKMLQGRLF Y DAHRYR+GANH+ +P+NRP Sbjct: 301 DRNPENYFAEVEQAAFSPGQFVPGIEASPDKMLQGRLFGYSDAHRYRLGANHHSIPVNRP 360 Query: 360 VAEVNNNQRDGAMIHGNNGGGSVYYEPNSFGGAAESPAHKPAAFDVSGKADSVPYDHDDH 419 EVNN QRDG M NGG YEPNS G E K F++ G+ADSV YD DDH Sbjct: 361 KNEVNNYQRDGFMSVDGNGGNKPNYEPNSVNGPTEDSEAKINPFEIYGQADSVTYDSDDH 420 Query: 420 YTQPGDLYRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGLGL 479 YTQ GDLYRL+S +E+ RLV VG MTPV KDEIKLRQI H YKAD E+G+RVA GLGL Sbjct: 421 YTQAGDLYRLMSADEKDRLVEAFVGHMTPVTKDEIKLRQIEHIYKADAEWGERVAQGLGL 480 Query: 480 TVPQ 483 VP+ Sbjct: 481 QVPE 484 >ref|NP_815312.1| catalase/peroxidase [Enterococcus faecalis V583] gb|AAO81382.1| catalase/peroxidase [Enterococcus faecalis V583] Length = 478 Score = 671 bits (1732), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/471 (68%), Positives = 379/471 (80%), Gaps = 3/471 (0%) Query: 8 LTTSWGAPVGDNQNSMTAGSRGPTLLQDVHLLEKLAHFNRERVPERVVHAKGAGAHGYFE 67 LTTS G+PVGDNQNS+TAG GP L+QDVHLLEKLAHFNRERVPERVVHAKGAGAHG F+ Sbjct: 6 LTTSQGSPVGDNQNSLTAGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKGAGAHGIFK 65 Query: 68 VTQDLSKYTKAAFLSEVGKRTPMFIRFSTVAGELGSADTVRDPRGFAVKFYTEEGNYDLV 127 V+Q +++YTKA FLSEVGK TP+F RFSTVAGELGS+DT+RDPRGFA+KFYT+EGNYDLV Sbjct: 66 VSQSMAQYTKADFLSEVGKETPLFARFSTVAGELGSSDTLRDPRGFALKFYTDEGNYDLV 125 Query: 128 GNNTPVFFIRDAIKFPDFIHTQKRHPQTHLKNPNAVWDFWSLSPESLHQVTILMSDRGIP 187 GNNTP+FFIRDAIKFPDFIH+QKR+P+THLK+P AVWDFWS SPESLHQVTILMSDRGIP Sbjct: 126 GNNTPIFFIRDAIKFPDFIHSQKRNPRTHLKSPEAVWDFWSHSPESLHQVTILMSDRGIP 185 Query: 188 ATLRHMHGFGSHTFKWVNADGAAVWVKYHFKTEQGVKNLDVKLAAQIAGENPDYHTEDLF 247 + RHMHGFGSHTFKWVNA G +VKYHFKT QG+KNL+ +LA +IAG+NPD+H EDL Sbjct: 186 LSFRHMHGFGSHTFKWVNAAGEVFFVKYHFKTNQGIKNLESQLAEEIAGKNPDFHIEDLH 245 Query: 248 NAIDQGDFPAWRLYVQIMPVEDADTYRFDPFDVTKVWSQKDYPLIEVGRMVLDRNPENYF 307 NAI+ +FP+W L VQI+P DA T + FDVTK SQK+YPLIEVG M L+RNPENYF Sbjct: 246 NAIENQEFPSWTLSVQIIPYADALTMKETLFDVTKTVSQKEYPLIEVGTMTLNRNPENYF 305 Query: 308 AEVEQATFSPGSFVPGIEASPDKMLQGRLFAYGDAHRYRVGANHNQLPINRPVAEVNNNQ 367 AEVEQ TFSPG+FVPGIEASPDK+LQGRLFAYGDAHR+RVGAN +QLPIN+ A VNN Q Sbjct: 306 AEVEQVTFSPGNFVPGIEASPDKLLQGRLFAYGDAHRHRVGANSHQLPINQAKAPVNNYQ 365 Query: 368 RDGAMIHGNNGGGSVYYEPNSFGGA-AESPAHKPAAFDVSGKADSVPYDHDDHYTQPGDL 426 +DG M NNG + YEPNS+ E P K ++F+V G + Y+ DH+TQ L Sbjct: 366 KDGNM-RFNNGNSEINYEPNSYTETPKEDPTAKISSFEVEGNVGNYSYNQ-DHFTQANAL 423 Query: 427 YRLLSEEERARLVRNIVGAMTPVEKDEIKLRQIGHFYKADPEFGQRVAAGL 477 Y LL EE+ L+ NI ++ V+ EI RQI F + +PE+G RVA + Sbjct: 424 YNLLPSEEKENLINNIAASLGQVKNQEIIARQIDLFTRVNPEYGARVAQAI 474 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 811,538,153 Number of extensions: 36833383 Number of successful extensions: 72246 Number of sequences better than 1.0e-05: 563 Number of HSP's gapped: 71206 Number of HSP's successfully gapped: 564 Length of query: 486 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 356 Effective length of database: 404,274,708 Effective search space: 143921796048 Effective search space used: 143921796048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)