BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0013.p (117 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_715725.1| carboxymuconolactone decarboxylase family prote... 159 2e-38 ref|NP_860999.1| conserved hypothetical protein [Helicobacter he... 159 2e-38 ref|NP_827933.1| hypothetical protein [Streptomyces avermitilis ... 145 2e-34 ref|NP_800651.1| gamma-carboxymuconolactone decarboxylase [Vibri... 141 4e-33 gb|EAG84271.1| unknown [environmental sequence] 137 6e-32 >ref|NP_715725.1| carboxymuconolactone decarboxylase family protein [Shewanella oneidensis MR-1] gb|AAN53170.1| carboxymuconolactone decarboxylase family protein [Shewanella oneidensis MR-1] Length = 128 Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 74/112 (66%), Positives = 88/112 (78%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEP 61 E+DG G KVI SL DI PDLG+++IE+ FGDIY REGLDLK R+L+T++ALTALG C+P Sbjct: 15 EIDGEAGEKVIRSLADICPDLGKYIIEYPFGDIYQREGLDLKTRELVTVAALTALGHCQP 74 Query: 62 QLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEERGLA 113 QL VHIN ALNVG +PKEIVE +L + YAGFP LN FVAK VF ER L+ Sbjct: 75 QLNVHINGALNVGCTPKEIVEVILQMSVYAGFPAALNGMFVAKTVFSERELS 126 >ref|NP_860999.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] gb|AAP78065.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 169 Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 70/108 (64%), Positives = 91/108 (84%) Query: 3 VDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEPQ 62 +DG G+KVI SL DI+PDLG+F+IEFAFGDIY+R L+L++R++IT+S+L GGCE Q Sbjct: 60 IDGEAGSKVISSLEDIAPDLGRFIIEFAFGDIYTRGELNLQEREMITLSSLLTAGGCEAQ 119 Query: 63 LTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEER 110 L VHINAALNVG+S ++I+E L+ C PY GFP+VLNA FVAK+VF+ER Sbjct: 120 LEVHINAALNVGISKEKIIECLMQCIPYTGFPKVLNAVFVAKKVFKER 167 >ref|NP_827933.1| hypothetical protein [Streptomyces avermitilis MA-4680] dbj|BAC74468.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 145 Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 68/111 (61%), Positives = 85/111 (76%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEP 61 +VDG G +V+ +L DI+P+LG ++ +AFGDIY R GL + RQL+T+ LTALGGCE Sbjct: 20 QVDGEAGERVVAALGDINPELGHQIVSWAFGDIYDRPGLAPRDRQLVTLGMLTALGGCEV 79 Query: 62 QLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEERGL 112 QL VH+NAALNVGLSP EIVEALLH Y G P+ +NA+ VAK+VF ERGL Sbjct: 80 QLEVHVNAALNVGLSPDEIVEALLHSAVYCGIPKAMNASLVAKKVFAERGL 130 >ref|NP_800651.1| gamma-carboxymuconolactone decarboxylase [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC62484.1| gamma-carboxymuconolactone decarboxylase [Vibrio parahaemolyticus] Length = 125 Score = 141 bits (356), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 65/109 (59%), Positives = 81/109 (74%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEP 61 ++DG G KVIESL DI PDL +F IE+ FGDIY+REGLDLK R++ T+SALTA+G C P Sbjct: 15 KIDGEAGQKVIESLNDICPDLAKFTIEYPFGDIYTREGLDLKSREIATVSALTAMGNCTP 74 Query: 62 QLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVFEER 110 QL VH++AALNVG + +EI E ++ + YAGFP LN F KEV ER Sbjct: 75 QLKVHLHAALNVGCTEEEIKEVIIQMSVYAGFPAALNGMFAFKEVLSER 123 >gb|EAG84271.1| unknown [environmental sequence] Length = 137 Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 64/106 (60%), Positives = 79/106 (74%) Query: 2 EVDGTGGAKVIESLRDISPDLGQFVIEFAFGDIYSREGLDLKQRQLITISALTALGGCEP 61 EVD G +V+E+L DISPDLG++V+EF FGD+YSR GL L++R++ TI+ALTALG P Sbjct: 15 EVDDVAGERVVEALADISPDLGRYVVEFGFGDVYSRPGLTLREREIATIAALTALGNAAP 74 Query: 62 QLTVHINAALNVGLSPKEIVEALLHCTPYAGFPRVLNATFVAKEVF 107 QL VHI A LNVGL+ +EI E +L YAGFP LN F AKEVF Sbjct: 75 QLKVHIAAGLNVGLTRQEITETILQMALYAGFPAALNGMFAAKEVF 120 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.140 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 168,617,422 Number of extensions: 5924685 Number of successful extensions: 15704 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 15626 Number of HSP's successfully gapped: 167 Length of query: 117 Length of database: 757,237,578 Length adjustment: 82 Effective length of query: 35 Effective length of database: 534,599,460 Effective search space: 18710981100 Effective search space used: 18710981100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)