BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0057.0011.p
         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAI10507.1| unknown [environmental sequence]                        59   3e-08
ref|NP_149341.1| Transcriptional regulator, MerR family [Clostri...    59   4e-08
gb|EAG64225.1| unknown [environmental sequence]                        58   8e-08
ref|NP_722401.1| putative transcriptional regulator [Streptococc...    57   1e-07
ref|NP_470958.1| similar to transcriptional regulator (MerR fami...    57   1e-07

>gb|EAI10507.1| unknown [environmental sequence]
          Length = 165

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W+QF++ L+   +P+  M+ ++ LR +G  T+ ERR +L AHR  V A++ +L  NL  I
Sbjct: 53  WLQFVMRLKATGMPVAGMQAFAALRAEGQPTMGERRDLLVAHRDAVLARIAELQSNLGAI 112

Query: 63  AGKIKYYKE 71
             KI YY+E
Sbjct: 113 IDKIAYYEE 121


>ref|NP_149341.1| Transcriptional regulator, MerR family [Clostridium acetobutylicum]
 gb|AAK76923.1| Transcriptional regulator, MerR family [Clostridium acetobutylicum]
          Length = 123

 Score = 58.5 bits (140), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           + W++F+  L+  ++PI+E+K+Y+ LR  G +T+ ER  ML AHR  ++ ++     NL+
Sbjct: 45  LKWIEFIKRLKNTNMPIKEIKKYAVLRSLGKTTLEERFEMLIAHRENLKKEINSYIENLK 104

Query: 61  KIAGKIKYYKE 71
           ++  KI YY+E
Sbjct: 105 ELDNKIDYYRE 115


>gb|EAG64225.1| unknown [environmental sequence]
          Length = 119

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           + W++FL  L+   +PIR+M RY++LR QGP+T  +R+ +LE HR  V A + +L   L+
Sbjct: 44  LVWIEFLGRLKTTGMPIRQMLRYAELRRQGPATEKQRQRLLEQHRDAVRAHIYELQSCLD 103

Query: 61  KIAGKIKYY 69
            +  KI  Y
Sbjct: 104 VLDDKIAGY 112


>ref|NP_722401.1| putative transcriptional regulator [Streptococcus mutans UA159]
 gb|AAN59707.1| putative transcriptional regulator [Streptococcus mutans UA159]
          Length = 124

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 3   WVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLEKI 62
           W+ F++ L+ + +PI+E+K YSDLR +G ST  ER ++LE H   ++  +  L  N EK+
Sbjct: 47  WLLFILRLKAVGMPIKEIKHYSDLREKGESTYLERLILLEHHLQVLDNNIADLLDNREKL 106

Query: 63  AGKIKYYKE 71
             KI +Y+E
Sbjct: 107 IEKIHFYQE 115


>ref|NP_470958.1| similar to transcriptional regulator (MerR family) [Listeria
           innocua]
 pir||AE1635 transcription regulator (MerR family) homolog lin1622 [imported] -
           Listeria innocua (strain Clip11262)
 emb|CAC96853.1| lin1622 [Listeria innocua]
          Length = 145

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 47/72 (65%)

Query: 1   VAWVQFLVVLRELDIPIREMKRYSDLRGQGPSTVHERRLMLEAHRSRVEAQMRKLSGNLE 60
           + W+  +V++RE+ +PIRE++ Y  L  +GP T+ ER  ++  ++  VE +M+ +  +L+
Sbjct: 46  IEWLYMIVLMREVGVPIREIRSYIQLLLKGPETIPERYQLVTQYKQSVEEKMKAMQTSLK 105

Query: 61  KIAGKIKYYKEM 72
            +  K+ +Y+EM
Sbjct: 106 WLGAKVNFYQEM 117


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 118,443,924
Number of extensions: 3548837
Number of successful extensions: 11644
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 11647
Number of HSP's successfully gapped: 9
Length of query: 82
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 30
Effective length of database: 616,052,430
Effective search space: 18481572900
Effective search space used: 18481572900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)