BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0008.p (121 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_349168.1| Hypothetical protein [Clostridium acetobutylicu... 91 8e-18 ref|NP_900345.1| conserved hypothetical protein [Chromobacterium... 86 3e-16 gb|AAP84183.1| conserved hypothetical protein [Pseudomonas aerug... 75 3e-13 gb|EAF38314.1| unknown [environmental sequence] 70 1e-11 ref|NP_820024.1| hypothetical protein [Coxiella burnetii RSA 493... 69 4e-11 >ref|NP_349168.1| Hypothetical protein [Clostridium acetobutylicum] pir||A97215 hypothetical protein CAC2557 [imported] - Clostridium acetobutylicum gb|AAK80508.1| Hypothetical protein [Clostridium acetobutylicum] Length = 124 Score = 90.9 bits (224), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 51/118 (43%), Positives = 71/118 (60%), Gaps = 11/118 (9%) Query: 7 LSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMG---EEGAGMVE 63 L KHI LE LL PE+R + LLAD F E+ SSG ++ K + G +EG + E Sbjct: 4 LKKHILKLENDLLKPEIRQCEARTSELLADGFTEFCSSGYIY--KYVHGQAMDEGTNLEE 61 Query: 64 LT--LSEFALHPLSEDAVLATYKTLN----AKNGGYTLRSSIWRCRDGLWQMLFHQGT 115 + +++F + LS D VLATY + +N Y+LRSSIW+C +G W+M+FHQGT Sbjct: 62 MDWEITDFKIKQLSNDCVLATYGLIKHNELNQNKKYSLRSSIWKCFEGKWKMIFHQGT 119 >ref|NP_900345.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] gb|AAQ58351.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 128 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 11/123 (8%) Query: 1 MMNVASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLM-----G 55 M + L +H+ E LLT +R L ++AD+F+E+G+SG + K++++ Sbjct: 1 MEDTDRLYRHLIDKEAALLTKAIRRDVAMLDRMIADDFLEFGASGTAFGKREVLQQLPAA 60 Query: 56 EEGAGMVELTLSEFALHPLSEDAVLATYKTLNAKNGG---YTLRSSIWRCRDGLWQMLFH 112 E+G + +F L ED V T+K++ A YTLRSSIWR RD WQM+FH Sbjct: 61 EDGPA---IHAQDFQARRLGEDVVQITFKSVRAPASSAPRYTLRSSIWRRRDNAWQMVFH 117 Query: 113 QGT 115 QGT Sbjct: 118 QGT 120 >gb|AAP84183.1| conserved hypothetical protein [Pseudomonas aeruginosa] Length = 119 Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 66/112 (58%), Gaps = 4/112 (3%) Query: 11 ICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKD-LMGEEGAGMVELTLSEF 69 I LE+ LL PE R + + L LL ++FVE+G+ G+ W K + ++G + ++ T+ +F Sbjct: 7 ILALEQLLLEPESRKNDRLLKQLLTEDFVEFGAIGKSWTKAEVIVGLKSQTWIKRTIEDF 66 Query: 70 ALHPLSEDAVLATYKTLNAKNGG---YTLRSSIWRCRDGLWQMLFHQGTPAA 118 L L++ LATY+ + G ++RSS+W+ + W M+FHQGT + Sbjct: 67 KLRVLADGVALATYRCRHQNANGDESLSMRSSVWKTYEDGWHMVFHQGTRVS 118 >gb|EAF38314.1| unknown [environmental sequence] Length = 135 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 5 ASLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGEEGAGMV-E 63 ASL H+ E +LL PEVR S + L LL DEF+E ++G ++K ++ +V + Sbjct: 7 ASLFNHLIEAERQLLEPEVRQSERALDALLDDEFIEIAANGTSFNKYQVLTRLPTEVVPQ 66 Query: 64 LTLSEFALHPLSEDAVLATYKTLNAKNG----GYTLRSSIWRCRDG-LWQMLFHQGTPAA 118 F LS D +Y+ ++ Y+LR S+WR WQM+FHQGTP A Sbjct: 67 FYNQHFKGRMLSIDVAQISYQAAYRRSARAEFNYSLRMSLWRKNSAQQWQMVFHQGTPCA 126 >ref|NP_820024.1| hypothetical protein [Coxiella burnetii RSA 493] gb|AAO90538.1| hypothetical protein [Coxiella burnetii RSA 493] Length = 118 Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 7/115 (6%) Query: 6 SLSKHICGLEEKLLTPEVRTSPQQLGLLLADEFVEYGSSGRVWHKKDLMGE-EGAGMVEL 64 SL K I E+KLL P + ++ LLAD+F+E GSSG V+++ D++ + + E+ Sbjct: 3 SLFKKIFENEKKLLDP--KNYLDEITELLADDFIEIGSSGHVYYRNDVIFQLSNLNIQEI 60 Query: 65 TLSEFALHPLSEDAVLATYK----TLNAKNGGYTLRSSIWRCRDGLWQMLFHQGT 115 + F + ++ VL YK N+ + RSS+W+ G W+++FHQGT Sbjct: 61 KILNFEAKLVEKNIVLVLYKAEKKISNSNVTQISFRSSLWKRVKGTWKIIFHQGT 115 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 186,058,427 Number of extensions: 6880303 Number of successful extensions: 12912 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 12906 Number of HSP's successfully gapped: 8 Length of query: 121 Length of database: 757,237,578 Length adjustment: 85 Effective length of query: 36 Effective length of database: 526,454,163 Effective search space: 18952349868 Effective search space used: 18952349868 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)