BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0057.0002.p (448 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_630332.1| probable sugar transport system sugar-binding l... 198 3e-49 gb|EAB59221.1| unknown [environmental sequence] 110 1e-22 ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [The... 103 1e-20 ref|NP_631226.1| putative secreted sugar-binding protein [Strept... 99 2e-19 gb|EAJ96839.1| unknown [environmental sequence] 97 6e-19 >ref|NP_630332.1| probable sugar transport system sugar-binding lipoprotein SC2H4.13c [Streptomyces coelicolor A3(2)] pir||T37229 hypothetical protein SC2H4.13c - Streptomyces coelicolor emb|CAA20607.1| probable sugar transport system sugar-binding lipoprotein SC2H4.13c [Streptomyces coelicolor A3(2)] Length = 440 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 133/400 (33%), Positives = 213/400 (53%), Gaps = 19/400 (4%) Query: 65 ISGKITFLTNRTDMI-GKEYDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPD 123 +SG IT LTNRTD++ +Y FN+ YP++KVEFE TDY + K+RM + + D Sbjct: 42 VSGDITVLTNRTDLVEDGTMKKYAAEFNKTYPDVKVEFEG-LTDYEGEVKIRMNTEDYGD 100 Query: 124 IMFIPT-VPNSDLTKYFAPLDDLG-LNDQITFKDFKSYDGKLYGITTGNSTSGIVYNKKA 181 ++ IP+ V D K+FAPL + + + F D G+ YGI T + +G+VYNK Sbjct: 101 VLLIPSAVAKGDYPKFFAPLGETSSMEPKYRFTDKTDVGGRTYGIATFGTANGLVYNKAL 160 Query: 182 FADAGITEVPKTWDEFLAACEKLKAK-GIIPLASNFKDKWPLNNWVYDMPRVIEGKAEFP 240 + AGIT+ P T FL E +K K G P +NFKD WPL + + I ++ Sbjct: 161 WKKAGITDWPTTTGRFLDDLEAVKEKTGATPYYTNFKDGWPLESPWTNGVGSISCDSQAS 220 Query: 241 NEKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGN 300 ++ + P+T N +LL ++ + EKD +TNWE SK +A G+ G LG+ Sbjct: 221 DKLAAMDEPWTEGNDLNTLDTLLYDIVHEKLSEKDPATTNWESSKTLLAKGRVGSMMLGS 280 Query: 301 WVINQVINA----GTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVK 356 W +NQ+ +A G D++GF P+P +GT A L D+ AV+ S + +AA+A++ Sbjct: 281 WAVNQMRDAAEAAGQNPDDIGFMPVPSQKNGTFCATLVSDYQQAVNIHSDHKEAARAWID 340 Query: 357 WMIEESGYEDFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDE-AKVTEIGNKAQVDL 415 W E+SGY G +S LK E +Q++ V++ E + + A V I N +++ L Sbjct: 341 WFTEKSGYAAEEGAVSALK-SEGMPETLQDYVDNDVKMIERSEAKTADVNAIDNASEIGL 399 Query: 416 --PAMLQEFV-LAK-----DPQSVLEKWNKAWAKSKKDLG 447 P ++ + +A+ + + NK W+ +++ +G Sbjct: 400 NKPDYRKKLIDIARGVTDGSLEGYFDDLNKRWSAARQTVG 439 >gb|EAB59221.1| unknown [environmental sequence] Length = 282 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 20/234 (8%) Query: 141 PLDDL----GLNDQITFKDFKS----YDGKLYGITTGNSTSGIVYNKKAFADAGITEVPK 192 P+DD+ GL D + K + Y+GK Y + SG+ YNK AG+ +P+ Sbjct: 21 PIDDMWNGNGL-DMVVAKSVANSATMYNGKRYLVPLNYHYSGMFYNKSVLNKAGVNTMPR 79 Query: 193 TWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWV-YDMPRVIEGKAEFPNEKLNQEAPFT 251 TWD+FL+ C KLK++GI P+A K++WP W Y + R + ++ + + +A + Sbjct: 80 TWDDFLSLCAKLKSRGITPIALGSKNRWPAQFWFDYLILRTV--GPDYRHNLMTGKASYD 137 Query: 252 MDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNWVI----NQVI 307 D A S+ ++L +KGY + N+ W + +A GK M +G W+ + Sbjct: 138 -DYAVKHAMSVWKDLVDKGYFTNNSNADTWTDASDKVARGKAAMTLMGTWITGYWNGMDL 196 Query: 308 NAGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIEE 361 G D FFP P ++G A + P VS ++KN AK F+ +M+ Sbjct: 197 KPGVDYD---FFPFPIMSTGIPNAVVGPVDGLVVSANAKNPSGAKKFLSFMMSN 247 >ref|NP_623882.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] gb|AAM25486.1| Sugar-binding periplasmic proteins/domains [Thermoanaerobacter tengcongensis] Length = 453 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/316 (28%), Positives = 141/316 (44%), Gaps = 30/316 (9%) Query: 68 KITFLTN---RTDMIGKEYDEYVKRFNEKYPNIKVEFEASQTD-YNQQAKVRMASGELPD 123 KI FL+N RT GK + + +++PN+K+E EA Q + Y Q+ KV AS E+PD Sbjct: 53 KIKFLSNLPDRTSGQGKLEQMLIDEYMKEHPNVKIEVEALQDEPYKQKFKVYAASNEMPD 112 Query: 124 IMFIPTVPNSDLTKYFAPLDDLGLNDQI-------------TFKDFKSYDGKLYGITTGN 170 I + P+ +F P+ GL ++I + KDF Y+GKLYG+ Sbjct: 113 IFMVWGQPS-----FFLPVMKAGLVEEIKMDQIKDYGFKTSSLKDFM-YEGKLYGLPRNT 166 Query: 171 STSGIVYNKKAFADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMP 230 + YNK F D VP T+DE L A + + I P++ N KDKW L D+ Sbjct: 167 DFMVLYYNKGLF-DKYSVNVPNTFDELLGAVKTFRKNNIAPISINGKDKWSLAILYQDLV 225 Query: 231 RVIEGKAEFPNEKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAA 290 G E+ L+++ + D KA EL G + + ++ + A Sbjct: 226 LKESGDQEYIYRVLSEKNNISKDPILLKAAKDFVELVNAGGFQDSFIAADYGAANNLFAQ 285 Query: 291 GKFGMYFLGNWVINQVINAGTTSD-----NVGFFPLPYDNSGTTTAALS-PDFFYAVSKD 344 K MY++G+W + N + +V +FP+ T L+ YAVS Sbjct: 286 EKAAMYYMGSWEVGMATNPNFSDSFKKNLDVTYFPIISGGKAKNTDILAWHGGGYAVSSK 345 Query: 345 SKNVDAAKAFVKWMIE 360 S + A + +M+E Sbjct: 346 SPVKEEAMKLLLFMME 361 >ref|NP_631226.1| putative secreted sugar-binding protein [Streptomyces coelicolor A3(2)] emb|CAC01656.1| putative secreted sugar-binding protein [Streptomyces coelicolor A3(2)] Length = 425 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/305 (27%), Positives = 137/305 (44%), Gaps = 17/305 (5%) Query: 66 SGKITFLTNRTDMIGKEY-DEYVKRFNEKYPNIKVEFE---ASQTDYNQQAKVRMASGEL 121 +G + L N T + K Y E V F + P IKV+ + A+ + + +A+G Sbjct: 42 TGTVRMLVNITPNLTKGYWRELVAPFEKANPGIKVQIDSPTAADGSVDSTLQQLLAAGNA 101 Query: 122 PDIMFIPTVPNSDLTKYFAPLDDLGLNDQITFKDFKSYDGKLYGITTGNSTSGIV-YNKK 180 PD+ + N + Y L DLG D + DG LY + G +V YNKK Sbjct: 102 PDV--VEGSHNDKVLPYLRDLSDLGWAADAPMADAQRLDGHLYDVAIGQQVQSLVFYNKK 159 Query: 181 AFADAGITEVPKTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDM--PRVIEGKAE 238 AF AGIT+ P T E A KLK+ G +P+ + +W V + P V G+ + Sbjct: 160 AFEKAGITKPPATMRELTTAMRKLKSAGYLPMQT--AGEWVTQAQVMMLFAPTVTTGEPD 217 Query: 239 FPNEKLNQEAPFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFL 298 + + + D G A L ++ ++GYL+K T + ++ + +GK MY + Sbjct: 218 WFKQASDGRRSLGTD--LGPAMDLYKDWLDEGYLDKQALGTKYADAETEFLSGKAAMYPM 275 Query: 299 GNWVINQVINAGTTSD-NVGFFPLPYDNSGTT-TAALSPDFFYAVSKDSKNVDAAKAFVK 356 G W + A D VG F P N +T +++P Y + K ++ A++ V+ Sbjct: 276 GCWFV--AAEAQAKKDFEVGVFASPQLNDASTPRLSVTPGANYRIFKAGEHQKASEKLVQ 333 Query: 357 WMIEE 361 ++ + Sbjct: 334 FLTTD 338 >gb|EAJ96839.1| unknown [environmental sequence] Length = 406 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 155/366 (42%), Gaps = 32/366 (8%) Query: 83 YDEYVKRFNEKYPNIKVEFEASQTDYNQQAKVRMASGELPDI----------MFIPTVPN 132 ++ YV F +P + V + + + A + E PD+ F+ Sbjct: 36 FNSYVDAFKAAHPEVTVVVNEFEHEAYKTAIRNFLTAEAPDVAVWFAGNRMKFFVDQGLF 95 Query: 133 SDLTKYFAPLDDLGLNDQI-TFKDFKSYDGKLYGITTGNSTSGIVYNKKAFADAGITEVP 191 D++ + +D GLND + + K + DGK YG+ G G+ Y K F G+ VP Sbjct: 96 QDVSDVW---EDAGLNDLMASSKGSLTVDGKQYGVPWGYYQWGVYYRKDLFDQLGLN-VP 151 Query: 192 KTWDEFLAACEKLKAKGIIPLASNFKDKWPLNNWVYDMPRVIEG---KAEFPNEKLNQEA 248 + W+EF C LK GI P+ K W W + I G + K++ E Sbjct: 152 RDWEEFKWVCAMLKKNGITPITIGTKFLWTAGGWFDYLNLRINGYQFHMDLTAGKVSYED 211 Query: 249 PFTMDNGYGKAFSLLRELNEKGYLEKDINSTNWEQSKKDIAAGKFGMYFLGNWVINQVIN 308 P +D F REL + GY +D S +W+ ++ G+ MY +GN+ + + + Sbjct: 212 P-RLD----AVFDHWRELIDPGYFLEDHASFSWQDAQAPQINGEAAMYLIGNFYVPTLES 266 Query: 309 AGTTSDNVGFFPLPYDNSGTTTAALSPDFFYAVSKDSKNVDAAKAFVKWMIE---ESGYE 365 AG D + FF P G A +P + +KNV+ AK F+ ++ + + Sbjct: 267 AGVV-DKMDFFQFPTIYEGVGVAEDAPTDTIHIPSGAKNVEDAKKFLAFLSNAEAATNWA 325 Query: 366 DFAGFLSPLKGKESKLPQIQEFQATGVQLQEATPDEAKVTEIGNKAQVDLPAM--LQEFV 423 AG LSP K + P FQ G ++ D A+ + + + AM QEF+ Sbjct: 326 KIAGVLSP--NKNAAKP-TDRFQVMGAKMLAEADDIAQFWDRDSNPDMAGAAMEGFQEFM 382 Query: 424 LAKDPQ 429 + D + Sbjct: 383 VKPDRE 388 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 637,170,195 Number of extensions: 27584059 Number of successful extensions: 57654 Number of sequences better than 1.0e-05: 227 Number of HSP's gapped: 57582 Number of HSP's successfully gapped: 227 Length of query: 448 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 319 Effective length of database: 406,989,807 Effective search space: 129829748433 Effective search space used: 129829748433 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 127 (53.5 bits)