BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0053.0008.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P37730|AMYD_THETU Potential starch degradation products trans... 259 7e-68 ref|NP_693490.1| multiple sugar-binding transport system permeas... 251 1e-65 ref|ZP_00121314.1| hypothetical protein [Bifidobacterium longum ... 230 3e-59 ref|NP_601659.1| ABC-type transporter, permease component [Coryn... 209 6e-53 ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, pe... 192 7e-48 >sp|P37730|AMYD_THETU Potential starch degradation products transport system permease protein amyD pir||S37704 amyD protein - Thermoanaerobacterium thermosulfurigenes gb|AAB00843.1| membrane protein for maltose transport [Thermoanaerobacterium thermosulfurigenes] prf||1802282A sugar transport protein Length = 292 Score = 259 bits (661), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 119/278 (42%), Positives = 189/278 (67%), Gaps = 2/278 (0%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLT 97 LF PTL + + V++IPF+ GIY +FT W+GI+ +G +N+ ++ D+EFW+S T Sbjct: 16 LFIAPTLLSLIIVVLIPFIIGIYYSFTDWNGIN-QPVFIGLKNFMTLRDDAEFWNSIIFT 74 Query: 98 LKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLV 157 K+ + +V+ NV+ LA +T+++ +N R F++PNL+GG++LGFIW FIF +V Sbjct: 75 AKFAVACIVIINVVGLSLAMLVTRKIFARNFMRTAFYLPNLIGGLILGFIWNFIFVDVFQ 134 Query: 158 YLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASID 217 + IG + WL+ FW LVIVT WQ GY+MVIY+A + +P D+ EA+ ID Sbjct: 135 TISDATHIG-WLGGWLSTTNTGFWGLVIVTSWQMIGYVMVIYIAYIESIPTDLIEASKID 193 Query: 218 GANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQK 277 GANSWQ+ + P++ P+F V LF++L F ++D NL+LT G P +TQ++++++YQ Sbjct: 194 GANSWQQFRNVVFPLIAPAFTVSLFITLSNSFKLFDQNLSLTAGAPGNTTQMITLNIYQT 253 Query: 278 AFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 AF +++ VGQA+A ++FL++AVI+++QVY ++K EVE Sbjct: 254 AFSAQEMAVGQAKAVIMFLIIAVISVIQVYLTQKREVE 291 >ref|NP_693490.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] dbj|BAC14525.1| multiple sugar-binding transport system permease [Oceanobacillus iheyensis HTE831] Length = 286 Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/285 (42%), Positives = 184/285 (64%), Gaps = 2/285 (0%) Query: 31 NRLRLRLLFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEF 90 NR LF PTL A V+ +PF+YG +FT W+G+ ++ +GF NY +F + F Sbjct: 3 NRSLSFWLFMTPTLVALGLVVFVPFIYGFVYSFTDWNGLQ-ANSFLGFENYIRLFQEEHF 61 Query: 91 WSSFGLTLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQF 150 ++ T+K+ + ++VL NV+ LA +T++++ N+FR FFMPNL+GG++LGFIWQF Sbjct: 62 LNAIWFTIKFAVVSIVLVNVIGLGLALLVTQKLKTSNLFRTVFFMPNLIGGLILGFIWQF 121 Query: 151 IFNNVLVYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADI 210 IF + GQ + F WL++ FW LVI+ WQY GY+M+IY+A L VP ++ Sbjct: 122 IFVSAFNSAGQLLGLE-FLQGWLSDATTGFWGLVILNAWQYGGYIMIIYIAYLEAVPQEL 180 Query: 211 QEAASIDGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLV 270 EA+ IDGAN +Q+ ++T P++ P+F + +FL+L F +YD NL LT GGPF ST+++ Sbjct: 181 MEASEIDGANPFQRFWKVTFPLVAPAFTISMFLTLSNAFKMYDQNLALTGGGPFKSTEMI 240 Query: 271 SMHVYQKAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKMEVE 315 +M +Y AF D QA+A + F+LVA + L QVY++KK EV+ Sbjct: 241 AMDIYNTAFSDYDMAFAQAKAVIFFILVAAVALTQVYYNKKREVD 285 >ref|ZP_00121314.1| hypothetical protein [Bifidobacterium longum DJO10A] ref|NP_695366.1| permease of ABC transporter possibly for oligosaccharides [Bifidobacterium longum NCC2705] gb|AAN24002.1| permease of ABC transporter possibly for oligosaccharides [Bifidobacterium longum NCC2705] Length = 318 Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 119/281 (42%), Positives = 177/281 (62%), Gaps = 13/281 (4%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLT 97 LF PT AF+ ++PF+ G+YL+F + ++ G VG +NYG D EF + G + Sbjct: 49 LFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGE-WVGLKNYGKALKDKEFLHALGFS 107 Query: 98 LKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVLV 157 + + T ++ NV+AF +AY LTK ++G +FR+ FFMPNL+GGI+LG+IW + N VL Sbjct: 108 TAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLA 167 Query: 158 YLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASID 217 + G+ + + AS+ FW LVI+ WQ GYMM+IY+AGL +P D+ EAA++D Sbjct: 168 HWGRALT---YKASY------GFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVD 218 Query: 218 GANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQK 277 GAN Q + R+ IP+M+PS VC FL++ GF +YD NL LT G P ++ +++++ + Sbjct: 219 GANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNI-TR 277 Query: 278 AFLSRD--YGVGQAEAFVLFLLVAVITLLQVYFSKKMEVEA 316 F R GVGQA+A + F+LVAVI L+Q + EV A Sbjct: 278 TFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA 318 >ref|NP_601659.1| ABC-type transporter, permease component [Corynebacterium glutamicum ATCC 13032] dbj|BAB99853.1| ABC-type transporter, permease components [Corynebacterium glutamicum ATCC 13032] emb|CAF21122.1| ABC-type sugar transport system, permease component [Corynebacterium glutamicum ATCC 13032] Length = 281 Score = 209 bits (532), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 116/281 (41%), Positives = 173/281 (61%), Gaps = 12/281 (4%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSE-FWSSFGL 96 +F PTL AF+ ++PF+ G +L+FT + I+ VG NY F+ E F S+FG Sbjct: 11 VFVLPTLLAFMIAFLVPFIVGFFLSFTKFTTIT-NAKWVGIDNYVKAFSQREGFISAFGF 69 Query: 97 TLKYVLFTVVLTNVLAFMLAYALTKRVRGQNVFRAGFFMPNLVGGIVLGFIWQFIFNNVL 156 T+ V+ +V+ N+ AF+LA+ LT+++RG N FR FFMPNL+GGIVLG+ WQ + N VL Sbjct: 70 TVLVVIVSVITVNIFAFLLAWLLTRKLRGTNFFRTVFFMPNLIGGIVLGYTWQTMINAVL 129 Query: 157 VYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASI 216 + SA W + L+++ WQ GYMM+IY+AGL VP ++ EAA + Sbjct: 130 SHYATT-----ISADW----KFGYAGLIMLLNWQLIGYMMIIYIAGLQNVPPELIEAAEL 180 Query: 217 DGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQ 276 DG N W+ L +TIPM++PS +CLFL+L F ++D NL LT G P G T++V++++ Sbjct: 181 DGVNKWEMLRHVTIPMVMPSITICLFLTLSNSFKLFDQNLALTNGAPGGQTEMVALNIIN 240 Query: 277 KAFLSRDY-GVGQAEAFVLFLLVAVITLLQVYFSKKMEVEA 316 F + GVGQA+A + ++V VI Q+ ++ E+EA Sbjct: 241 TLFNRMNVEGVGQAKAVIFVVVVVVIAYFQLRATRSKEIEA 281 >ref|ZP_00069191.1| COG1175: ABC-type sugar transport systems, permease components [Oenococcus oeni MCW] Length = 284 Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 169/277 (61%), Gaps = 4/277 (1%) Query: 38 LFTGPTLFAFLTVMIIPFVYGIYLTFTSWDGISVGHTLVGFRNYGSVFADSEFWSSFGLT 97 LF PTL +++IPF+ GI+ +FT+ +G++ + +G +NY + +D F S LT Sbjct: 10 LFIAPTLILLAVIIVIPFIIGIFYSFTNSNGLTA--SWIGLKNYQLLLSDDNFLESCWLT 67 Query: 98 LKYVLFTVVLTNVLAFMLAYALTKRVRGQN-VFRAGFFMPNLVGGIVLGFIWQFIFNNVL 156 + + L +VV NV+ A +T+ N + R FF+PNL+GGI+LGFIWQFIF + Sbjct: 68 ILFSLLSVVGINVIGLGFALLVTRSDNYFNRLLRTIFFVPNLIGGILLGFIWQFIFIQIF 127 Query: 157 VYLGQKASIGIFSASWLAEPGKAFWTLVIVTVWQYAGYMMVIYVAGLTGVPADIQEAASI 216 G+ WL+ P W LVI+ WQ +GY+M+IY++ L +P + E+A + Sbjct: 128 QAFGESLDWSWLKG-WLSTPATGLWGLVILFWWQMSGYIMLIYISFLNNIPKNTIESAEL 186 Query: 217 DGANSWQKLTRMTIPMMVPSFIVCLFLSLQRGFMVYDLNLTLTKGGPFGSTQLVSMHVYQ 276 DGAN+ Q + +P + P+F + LFL+L F +Y+ NL LT GGP+ ST+L+SM++Y Sbjct: 187 DGANNQQIFWHIKLPQLAPAFTISLFLTLANSFKIYEQNLALTNGGPYRSTELISMNIYN 246 Query: 277 KAFLSRDYGVGQAEAFVLFLLVAVITLLQVYFSKKME 313 AF++ G QAE VLF+ V +++ Q+YFS+K E Sbjct: 247 TAFVNYQQGYAQAEGIVLFIFVMLVSFAQLYFSRKRE 283 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.329 0.142 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 465,454,310 Number of extensions: 19189586 Number of successful extensions: 71731 Number of sequences better than 1.0e-05: 1392 Number of HSP's gapped: 70334 Number of HSP's successfully gapped: 1394 Length of query: 316 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 191 Effective length of database: 417,850,203 Effective search space: 79809388773 Effective search space used: 79809388773 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)