BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0048.0004.p (158 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_533571.1| conserved hypothetical protein [Agrobacterium t... 91 1e-17 ref|NP_357527.1| AGR_L_3477p [Agrobacterium tumefaciens] >gi|253... 90 2e-17 ref|NP_946626.1| conserved hypothetical protein [Rhodopseudomona... 87 9e-17 ref|NP_774013.1| blr7373 [Bradyrhizobium japonicum] >gi|27355656... 84 9e-16 ref|NP_437819.1| conserved hypothetical protein [Sinorhizobium m... 82 4e-15 >ref|NP_533571.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AI2933 conserved hypothetical protein Atu3071 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAL43887.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 161 Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 4 EAFTFKADKLLPNNPGLPAVLYKRALQENPESA--EQLFNDNGWRNSWVNGVFSYHHYHS 61 E F A +PNN P ++Y R + P++A E LF+ NGW W NGVF YHHYHS Sbjct: 4 ETHIFDAGDQIPNNQSFPVIIY-RQVNSQPDTAAFEALFSRNGWTGIWRNGVFDYHHYHS 62 Query: 62 NAHEVLGVMSGSASLQLGGMPGAGLRSRPGMSWCCLPVRHISGSRPRRTSASPALIPA 119 AHEVLGV G A+LQ+GG G L G CL + +G ++SA ++ A Sbjct: 63 GAHEVLGVGRGQATLQIGGADGQALEVTQG---DCLILPAGTGHMRLKSSADFQVVGA 117 >ref|NP_357527.1| AGR_L_3477p [Agrobacterium tumefaciens] pir||F98348 hypothetical protein AGR_L_3477 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK90312.1| AGR_L_3477p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 187 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 6/118 (5%) Query: 4 EAFTFKADKLLPNNPGLPAVLYKRALQENPESA--EQLFNDNGWRNSWVNGVFSYHHYHS 61 E F A +PNN P ++Y R + P++A E LF+ NGW W NGVF YHHYHS Sbjct: 30 ETHIFDAGDQIPNNQSFPVIIY-RQVNSQPDTAAFEALFSRNGWTGIWRNGVFDYHHYHS 88 Query: 62 NAHEVLGVMSGSASLQLGGMPGAGLRSRPGMSWCCLPVRHISGSRPRRTSASPALIPA 119 AHEVLGV G A+LQ+GG G L G CL + +G ++SA ++ A Sbjct: 89 GAHEVLGVGRGQATLQIGGADGQALEVTQG---DCLILPAGTGHMRLKSSADFQVVGA 143 >ref|NP_946626.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] emb|CAE26718.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 174 Score = 87.4 bits (215), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 52/90 (57%), Gaps = 5/90 (5%) Query: 6 FTFKADKLLPNNPGLPAVLYKRALQ---ENPESA-EQLFNDNGWRNSWVNGVFSYHHYHS 61 F D L+PN P LP +LYKRA+ PE A E+LF NGW + W NG+F YHHYH+ Sbjct: 13 LVFDDDGLIPNTP-LPLLLYKRAIDVSGREPEQAIEELFEQNGWGDRWRNGIFDYHHYHA 71 Query: 62 NAHEVLGVMSGSASLQLGGMPGAGLRSRPG 91 HE LGV G A + GG G + PG Sbjct: 72 TVHEALGVARGRAMVLFGGEQGEAIELTPG 101 >ref|NP_774013.1| blr7373 [Bradyrhizobium japonicum] dbj|BAC52638.1| blr7373 [Bradyrhizobium japonicum USDA 110] Length = 219 Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 2/88 (2%) Query: 5 AFTFKADKLLPNNPGLPAVLYKRALQENPE-SAEQLFNDNGWRNSWVNGVFSYHHYHSNA 63 A F+ D L+PNN LP ++Y+ A++ +PE + E LF +NGW +W NGV+ Y HYH+ Sbjct: 61 AIVFEDDGLVPNNI-LPFLVYQGAVKLDPEQTIENLFEENGWGGTWRNGVYDYLHYHATV 119 Query: 64 HEVLGVMSGSASLQLGGMPGAGLRSRPG 91 HEVLGV GSA ++ GG G L+ + G Sbjct: 120 HEVLGVARGSARVRFGGDHGQELQIKAG 147 >ref|NP_437819.1| conserved hypothetical protein [Sinorhizobium meliloti 1021] pir||G96001 conserved hypothetical protein SMb21450 [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49679.1| conserved hypothetical protein [Sinorhizobium meliloti] Length = 179 Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 61/114 (53%), Gaps = 8/114 (7%) Query: 3 IEAFTFKADKLLPNNPGLPAVLYKRALQENPESA---EQLFNDNGWRNSWVNGVFSYHHY 59 IE F +PNNP LP ++Y++A+ A E+ F NGWR W +GVF++HHY Sbjct: 3 IEELMFAESGGVPNNPRLPVLVYRQAIDVTENGATRIEERFRANGWRGLWRDGVFAHHHY 62 Query: 60 HSNAHEVLGVMSGSASLQLGGMPGAGLRSRPGMSWCCLPVRHISGSRPRRTSAS 113 H AHEVLG+ G A L +GG G + G LP +G+ RR AS Sbjct: 63 HCGAHEVLGIAEGRARLLIGGPDGQEVEVAAG-DVILLP----AGTGHRRNEAS 111 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.131 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 226,656,125 Number of extensions: 9380944 Number of successful extensions: 26461 Number of sequences better than 1.0e-05: 15 Number of HSP's gapped: 26453 Number of HSP's successfully gapped: 15 Length of query: 158 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 43 Effective length of database: 445,001,193 Effective search space: 19135051299 Effective search space used: 19135051299 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)