BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0007.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694303.1| hypothetical protein OB3381 [Oceanobacillus ihe... 315 1e-84 ref|ZP_00031575.1| COG0451: Nucleoside-diphosphate-sugar epimera... 170 3e-41 ref|ZP_00026477.1| COG0451: Nucleoside-diphosphate-sugar epimera... 150 5e-35 ref|NP_532863.1| conserved hypothetical protein [Agrobacterium t... 109 9e-23 ref|NP_355151.1| AGR_C_3984p [Agrobacterium tumefaciens] >gi|255... 109 9e-23 >ref|NP_694303.1| hypothetical protein OB3381 [Oceanobacillus iheyensis HTE831] dbj|BAC15337.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 317 Score = 315 bits (806), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 150/300 (50%), Positives = 210/300 (70%), Gaps = 3/300 (1%) Query: 25 ELLKRGISTVAFGRALPKLEQLAAKLGNPAGLSLKTGDVFKPEDVYQAAQGADVIFHCAS 84 ELL RG +AFGR+ KL+ L + N L+ GD+F + + +AA+ DVIF CA+ Sbjct: 20 ELLNRGGEVIAFGRSQRKLKALIKEHDNNPKLTYALGDIFDYQTIIEAAKDVDVIFQCAN 79 Query: 85 VPYHEMSSKLLPMGEAVMEAANRLGTRVIAIDGIYPYGRRKDEQPISEDFPKNPHTKKGK 144 V Y EM +KLLP+GE+VM+AA+ LG ++ +DGIY YG + + E P PHTKKGK Sbjct: 80 VKYQEMKTKLLPLGESVMKAADALGKHIVLVDGIYVYGHQVAKG--DEAHPHQPHTKKGK 137 Query: 145 VKLEFERMFFSPRWSRTERMIVRLPDYYGAAANEASYLGSTLEAIAAGKPGMFIGNMTVP 204 +++EFE++ F+ +W + +IVRLPDYYG + + SYL TLE IAA K +FIGN+ P Sbjct: 138 LRVEFEQLIFNSKWKNAKALIVRLPDYYGPTS-QNSYLQPTLEGIAANKTSIFIGNLKTP 196 Query: 205 REYVYLPDAAVMIVELALREEAYGQNWNIPGAGTISGKEIVRLARAASGRSKPVIPVGAF 264 REYVYLPDAA MIV +A ++++YG+NWNIPGAG ISGKEI++++R +G K VIP+ Sbjct: 197 REYVYLPDAARMIVTIAEKDDSYGENWNIPGAGLISGKEIIKISRQITGNQKMVIPLTKS 256 Query: 265 GLSLLGLFVPVMKEIVEMLYLTKEPLRLSGRKYERLAGPIPATSFEDGIRETIRAIQSRQ 324 + +GLF M+EIVE++YLTKE LSG KYE+ G IP T F++G+RET+R + +++ Sbjct: 257 TIRFIGLFDEFMREIVEIMYLTKEGFILSGEKYEKRIGTIPKTPFKEGLRETLRVLMAKE 316 >ref|ZP_00031575.1| COG0451: Nucleoside-diphosphate-sugar epimerases [Burkholderia fungorum] Length = 332 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 101/272 (37%), Positives = 146/272 (53%), Gaps = 5/272 (1%) Query: 46 LAAKLGNPAGLSLKTGDVFKPEDVYQAAQGADVIFHCASVPYHEMSSKLLPMGEAVMEAA 105 L A G + T + P + AA+G + + VPY + ++ P+ E + Sbjct: 41 LEAAFGRDPHAEIVTWNPDDPASIRAAAEGLQTVIYLVGVPYDQFAAHP-PLMERTLAGV 99 Query: 106 NRLGT-RVIAIDGIYPYGRRKDEQPISEDFPKNPHTKKGKVKLEFERMFFSPRWSR-TER 163 G R I I +YPYGR + PISED P+ PHT KG+++L E + + Sbjct: 100 TAAGVERFILIGTVYPYGRAQG-NPISEDHPREPHTFKGRMRLAQENLVLAAHGCNGLST 158 Query: 164 MIVRLPDYYGAAANEASYLGSTLEAIAAGKPGMFIGNMTVPREYVYLPDAAVMIVELALR 223 +++RLPD+YG E S L E A GK IG + VP E++YLPD ++ +L Sbjct: 159 LVLRLPDFYGPCI-ERSLLNGVFEGAATGKRAQMIGPLDVPHEFIYLPDIGPVVEKLTRT 217 Query: 224 EEAYGQNWNIPGAGTISGKEIVRLARAASGRSKPVIPVGAFGLSLLGLFVPVMKEIVEML 283 AYG+ W+ GAGTI+ +E+ R A A +GR+ ++ G L LLGLF P+M+E+VEM Sbjct: 218 PAAYGRWWHRAGAGTITQREVARQAYALAGRAPKLMVAGKTLLRLLGLFNPLMRELVEMN 277 Query: 284 YLTKEPLRLSGRKYERLAGPIPATSFEDGIRE 315 YL EP+ L +L GPI TS+E+GIR Sbjct: 278 YLMTEPVVLDDSALTKLIGPIARTSYEEGIRH 309 >ref|ZP_00026477.1| COG0451: Nucleoside-diphosphate-sugar epimerases [Ralstonia metallidurans] Length = 379 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 141/265 (53%), Gaps = 7/265 (2%) Query: 65 KPEDVYQAAQGADVIFHCASVPYHEMSSKLLP-MGEAVMEAANRLGTR-VIAIDGIYPYG 122 PE + AA G + + + V Y + +L P + ++AA G + +I I +YPYG Sbjct: 112 SPEAIQAAATGVETLIYLVGVNYWQF--ELHPALMRRTLDAAVAAGVKQIILIGTVYPYG 169 Query: 123 RRKDEQPISEDFPKNPHTKKGKVKLEFERMFFSPRWS-RTERMIVRLPDYYGAAANEASY 181 R + P+SED P+ PHT KG+++ E + R ++RLPD+YG E S Sbjct: 170 RAR-TTPVSEDHPREPHTFKGRMRKSQEDLLMQAHADGRIRATVLRLPDFYGPGV-ENSL 227 Query: 182 LGSTLEAIAAGKPGMFIGNMTVPREYVYLPDAAVMIVELALREEAYGQNWNIPGAGTISG 241 L + A A G IG + P E++++PD ++ L A+G+ W++ GAG + Sbjct: 228 LHRAVLAAANGGTADLIGPIDTPHEFIFVPDVGPVVARLVDTPAAFGKIWHLAGAGVTTQ 287 Query: 242 KEIVRLARAASGRSKPVIPVGAFGLSLLGLFVPVMKEIVEMLYLTKEPLRLSGRKYERLA 301 +E+V +GR+ + VG L LLGLF P+M+E+VEM YL +P+ + L Sbjct: 288 RELVEEMERQTGRAMKLRVVGKTMLRLLGLFNPLMRELVEMHYLQTDPVIMDDSALRALI 347 Query: 302 GPIPATSFEDGIRETIRAIQSRQAK 326 GPI TS++DGIR+T+ A A+ Sbjct: 348 GPIRKTSYQDGIRQTLTAAMCANAR 372 >ref|NP_532863.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||AE2845 conserved hypothetical protein Atu2190 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAL43179.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 345 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 141/302 (46%), Gaps = 19/302 (6%) Query: 26 LLKRGISTVAFGRALPKLEQLAAKLGNPAGLSLKTGDVFKPEDVYQAAQGADVIFHCASV 85 LL+RG A R +++AA G G+ TGDV +DV AA+GA +I H + Sbjct: 34 LLQRGWQVRALTR-----QRVAA--GASDGIERVTGDVMNRQDVMDAAKGATLIVHAVNP 86 Query: 86 P-YHEMSSKLLPMGEAVMEAANRLGTRVIAIDGIYPYGRRKDEQPI-SEDFPKNPHTKKG 143 P Y + ++LPM + + AA G R++ +Y +G D P+ ED P+ P T+KG Sbjct: 87 PGYRDWERQVLPMLDNTIAAAEACGARILLPGTVYNFG--PDAFPLLKEDSPQQPFTRKG 144 Query: 144 KVKLEFERMFFSPRWSRTERMIVRLPDYYGAAANEASYLGSTLEAIAAGKPGMFIGNMTV 203 +++E ER +IVR D++G A ++ L + GKP + N Sbjct: 145 ALRVEMERRLKMASMRGVPVLIVRAGDFFGPDAKN-NWFSQML--VRPGKPVRSVQNPAA 201 Query: 204 PR---EYVYLPDAAVMIVELALR--EEAYGQNWNIPGAGTISGKEIVRLARAASGRSKPV 258 P ++ YLPD A I L R E +++ G G ++V A GR + Sbjct: 202 PHAGHQWAYLPDVAETIGRLLDRSGELPPFAVYHMEGFWDFDGLQLVGAIERAVGRPVKM 261 Query: 259 IPVGAFGLSLLGLFVPVMKEIVEMLYLTKEPLRLSGRKYERLAGPIPATSFEDGIRETIR 318 + + L FVP+ +E++EM YL PLR+S K G P T + + T+ Sbjct: 262 RRMSWLAIKLAAPFVPLFREVLEMQYLWHMPLRMSNGKLTDFLGAEPKTPVDIAVSATLT 321 Query: 319 AI 320 ++ Sbjct: 322 SL 323 >ref|NP_355151.1| AGR_C_3984p [Agrobacterium tumefaciens] pir||G97622 hypothetical protein AGR_C_3984 [imported] - Agrobacterium tumefaciens (strain C58, Cereon) gb|AAK87936.1| AGR_C_3984p [Agrobacterium tumefaciens str. C58 (Cereon)] Length = 373 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 90/302 (29%), Positives = 141/302 (46%), Gaps = 19/302 (6%) Query: 26 LLKRGISTVAFGRALPKLEQLAAKLGNPAGLSLKTGDVFKPEDVYQAAQGADVIFHCASV 85 LL+RG A R +++AA G G+ TGDV +DV AA+GA +I H + Sbjct: 62 LLQRGWQVRALTR-----QRVAA--GASDGIERVTGDVMNRQDVMDAAKGATLIVHAVNP 114 Query: 86 P-YHEMSSKLLPMGEAVMEAANRLGTRVIAIDGIYPYGRRKDEQPI-SEDFPKNPHTKKG 143 P Y + ++LPM + + AA G R++ +Y +G D P+ ED P+ P T+KG Sbjct: 115 PGYRDWERQVLPMLDNTIAAAEACGARILLPGTVYNFG--PDAFPLLKEDSPQQPFTRKG 172 Query: 144 KVKLEFERMFFSPRWSRTERMIVRLPDYYGAAANEASYLGSTLEAIAAGKPGMFIGNMTV 203 +++E ER +IVR D++G A ++ L + GKP + N Sbjct: 173 ALRVEMERRLKMASMRGVPVLIVRAGDFFGPDAKN-NWFSQML--VRPGKPVRSVQNPAA 229 Query: 204 PR---EYVYLPDAAVMIVELALR--EEAYGQNWNIPGAGTISGKEIVRLARAASGRSKPV 258 P ++ YLPD A I L R E +++ G G ++V A GR + Sbjct: 230 PHAGHQWAYLPDVAETIGRLLDRSGELPPFAVYHMEGFWDFDGLQLVGAIERAVGRPVKM 289 Query: 259 IPVGAFGLSLLGLFVPVMKEIVEMLYLTKEPLRLSGRKYERLAGPIPATSFEDGIRETIR 318 + + L FVP+ +E++EM YL PLR+S K G P T + + T+ Sbjct: 290 RRMSWLAIKLAAPFVPLFREVLEMQYLWHMPLRMSNGKLTDFLGAEPKTPVDIAVSATLT 349 Query: 319 AI 320 ++ Sbjct: 350 SL 351 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 447,368,165 Number of extensions: 18259574 Number of successful extensions: 46158 Number of sequences better than 1.0e-05: 19 Number of HSP's gapped: 46143 Number of HSP's successfully gapped: 19 Length of query: 328 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 202 Effective length of database: 415,135,104 Effective search space: 83857291008 Effective search space used: 83857291008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)