BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0006.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_346825.1| Transcriptional regulators of NagC/XylR (ROK) f... 66 1e-09 ref|ZP_00074934.1| COG2971: Predicted N-acetylglucosamine kinase... 66 1e-09 ref|NP_693476.1| hypothetical protein OB2555 [Oceanobacillus ihe... 64 6e-09 ref|NP_384306.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m... 63 8e-09 ref|NP_541158.1| N-acetylglucosamine kinase [Brucella melitensis... 60 7e-08 >ref|NP_346825.1| Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase [Clostridium acetobutylicum] pir||B96922 transcription regulators of NagC/XylR (ROK) family, sugar kinase [imported] - Clostridium acetobutylicum gb|AAK78165.1| Transcriptional regulators of NagC/XylR (ROK) family, sugar kinase [Clostridium acetobutylicum] Length = 306 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 64/268 (23%), Positives = 116/268 (43%), Gaps = 14/268 (5%) Query: 8 VIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDL--QATHNVKQAIQEALQVAGRTL 65 VIG+DGGG+ T + +S+LD VL V G + + + +++ I E L G++L Sbjct: 4 VIGIDGGGSKTHMKISTLDYKVLLEVFKGPSNINSSTKEEVKRVLQELIMEGLGKLGQSL 63 Query: 66 GDVRGLAAGIAGYDSQEDLEWVQALTAVEGLDCPKWHYNDAVAAHYGALLTKPGIVALSG 125 + + G AG D ED ++ + G NDA A G + + GI+ +SG Sbjct: 64 EECSAICIGTAGADRTEDKSIIEDMIRSLGYMGKIIVVNDAEIALAGGIEKREGIIVISG 123 Query: 126 TGSIIMAMKEDGQYLRNYDFHHYTGSGARFLAYDAAYEMLAGHTDETDREMIKDMLCHWG 185 TGSI ++G+ R+ + H G YD + + D+ K +L Sbjct: 124 TGSICYGRNKEGRSARSGGWGHIIGDEGS--GYDIGIKAIKAALKSFDKRGEKTIL---- 177 Query: 186 AGTIQELWQLAR----TGFIEDRRNRDRKFEQFAPFITEAASKGSSLAGRVSDRAIYQLK 241 G I + +L +I ++ + A KG ++ R+ A +L Sbjct: 178 EGDILDFLKLKSHEDLINYIYRSGVTKKEIASLTRVVNSAYIKGDLVSKRILKEAARELF 237 Query: 242 VGIELLAPFVA--GETVLVSFIGSVINS 267 + ++ + ++ + V+++ G VIN+ Sbjct: 238 LSVKAVVEVLSMQNKKVVLTTAGGVINN 265 >ref|ZP_00074934.1| COG2971: Predicted N-acetylglucosamine kinase [Trichodesmium erythraeum IMS101] Length = 322 Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/323 (24%), Positives = 141/323 (43%), Gaps = 36/323 (11%) Query: 8 VIGVDGGGTHTRVMVSSLDGCVLSYVESGAA-WVQKDLQATHN-VKQAIQEALQVAGRTL 65 V+G+DGGGT T ++ + VL +SG + + ++ N ++ AI +A+ + Sbjct: 6 VLGIDGGGTKTEAVLMDENCQVLGSGKSGPSNYHSVGIEVAKNSIQTAITQAV-ANSNSY 64 Query: 66 GDVRGLAAGIAGYDSQEDLEWVQALTAVEGLDCP-KWHY--------NDAVAAHYGALLT 116 + G+ G+AG ED V++L +D P KW +D+ A G L Sbjct: 65 QPISGICLGLAGVGRPEDFLVVESLLKEIMMDIPIKWDLQPNTVVICSDSNIALVGGLGC 124 Query: 117 KPGIVALSGTGSIIMAMKEDGQYLRNYDFHHYTGSGARFLAYDAAYEMLAGHTDETD-RE 175 GIVA++GTGS++ G R + + G Y+ A L D RE Sbjct: 125 SVGIVAIAGTGSLVFGQNSHGLTKRVGGWGYLLGDEGS--GYNIAIRGLQAALKSYDGRE 182 Query: 176 ----MIKDMLCHWGAGTIQELWQLARTGFIEDRRNRDRKFEQFAPFITEAASKGSSLAGR 231 ++ D + G I+ + ++ I RR + AP ++ AA K +A + Sbjct: 183 SPTILVTDFTRYLGLKNIEGIIEI-----IYRRRWDVTRIAALAPIVSAAADKEDKVAKK 237 Query: 232 VSDRAIYQLKVGIELLAP--FVAGETVLVSFIGSVINSSY-----FKEKLSALLMQGSSQ 284 + A+ +L +++ F E V IGSV NS F++ ++A+ + Sbjct: 238 IIQGAVEELSKATKIVISTLFQVHEIFEVVTIGSVWNSMINFRGQFEDSIAAI-----AP 292 Query: 285 TYTIVEPRFTPVTGSVLYAISRV 307 T ++ P+ PV G+ + A+ + Sbjct: 293 TAQVIWPKHEPVYGAAILALKAI 315 >ref|NP_693476.1| hypothetical protein OB2555 [Oceanobacillus iheyensis HTE831] dbj|BAC14511.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 328 Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 32/312 (10%) Query: 9 IGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDLQATH------NVKQAIQEALQVAG 62 +G+DGGG+ T + +S G ++++V+ G + +LQAT +Q IQ+ G Sbjct: 5 LGIDGGGSTTTMAISDNRGNIVAHVQGGPS----NLQATSPDEIKDRFEQLIQKLEMQGG 60 Query: 63 RTLGDVRGLAAGIAGYDSQEDLEWVQALTAVEGLDC--PKWHYNDAVAAHYGALLTKPGI 120 + + + AGIAG +++ W++ L +E L K D + A Y L + GI Sbjct: 61 GKVSQIISVFAGIAGTGYEKNRYWMENLL-LELLPHVEKKLVLPDMINALYSGTLGESGI 119 Query: 121 VALSGTGSIIMAMKEDGQYLR----NYDFHHYTGSGARF--LAYDAAYEMLAGHTDETDR 174 V ++GTGS+ + G+ +R Y F GSGA A + G + T Sbjct: 120 VQIAGTGSVTYGINPTGKEVRVGGWGYLFGD-EGSGAALGMKALQVSLRYFDGRGEPTI- 177 Query: 175 EMIKDMLCHWGAGTIQELWQLARTGFIEDRRNRDRKFEQFAPFITEAASKGSSLAGRVSD 234 +++ + H+ QE+ I ++ + AP + +AA + LA ++ Sbjct: 178 -LLELLQEHYKTDDPQEI-----ISTIYQTNQVKQEVAKIAPLVFQAAIREDQLAKQLIY 231 Query: 235 RAIYQLKVGIE-LLAPFVAGETVLVSFI--GSVINSSYFKEKLSALLMQGSSQTYTIVEP 291 A +L + IE ++ +GE + I G + + + L +L SS +++P Sbjct: 232 EAANELALSIETVVNQLYSGEDNPIPVILSGGLFQAELLQTYLKEMLAANSS--IELIKP 289 Query: 292 RFTPVTGSVLYA 303 PV G+++ A Sbjct: 290 SLPPVGGAIIGA 301 >ref|NP_384306.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] emb|CAC41587.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 294 Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/241 (30%), Positives = 113/241 (46%), Gaps = 45/241 (18%) Query: 8 VIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDLQ-ATHNVKQAIQEALQVAGRTLG 66 +IG+DGGGT R V++LDG +L ++GAA + D + A N+ A ++A AG Sbjct: 5 LIGIDGGGTSCRAAVAALDGRILGRGKAGAANILTDPETALQNITDAARDAFGDAGL--- 61 Query: 67 DVRGLAA-----GIAGYDSQEDLEWVQALTAVEGLDCPKWHYNDAVAAHYGALLTKPGIV 121 D G+ A G+AG++ + + +V+ D +D + A GAL G V Sbjct: 62 DPAGIGASRAIVGVAGHNVGDAVHYVKRRLPFAQADIE----SDGLIALQGALGDGDGAV 117 Query: 122 ALSGTGSIIMAMKEDG-QYLRNYDF---HHYTGSGAR---------FLAYDAAYEMLAGH 168 A+ GTG+I +A + D Y+ + F H GSGAR LAYD ++ +G Sbjct: 118 AILGTGTIYIARRGDEVSYVGGWGFTIGDH--GSGARIGHALLQESLLAYDGIHQG-SGV 174 Query: 169 TDETDREMIKDMLCHWGAGTIQELWQLARTGFIEDRRNRDRKFEQFAPFITEAASKGSSL 228 TD E D I + +LA+ G +F ++AP + E A +G + Sbjct: 175 TDAVLAEFNDDPR------DIVDFARLAKPG----------EFGRYAPRVFEFAERGDPV 218 Query: 229 A 229 A Sbjct: 219 A 219 >ref|NP_541158.1| N-acetylglucosamine kinase [Brucella melitensis] pir||AC3532 N-acetylglucosamine kinase (EC 2.7.1.59) [imported] - Brucella melitensis (strain 16M) gb|AAL53422.1| N-acetylglucosamine kinase [Brucella melitensis 16M] Length = 293 Score = 60.1 bits (144), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 73/255 (28%), Positives = 110/255 (43%), Gaps = 37/255 (14%) Query: 8 VIGVDGGGTHTRVMVSSLDGCVLSYVESGAAWVQKDL-QATHNVKQAIQEALQVAGRTLG 66 +I VDGGGT R +++ DG V+S G A + D A NV + + A+ AG + Sbjct: 9 LIAVDGGGTGCRALLAKADGNVISKAVGGPANIGADTAMAIANVMETVTRAVHDAGLHIS 68 Query: 67 --DVRGLAAGIAGYDSQED-LEWVQALTAVEGLDCPKW--HYNDAVAAHYGALLTKPGIV 121 D G G+AG +S D LE V L W +D V A GAL G + Sbjct: 69 RLDETGAVLGLAGANSIPDRLELVAGLPF-------AWVRIVSDTVTALQGALGDNDGAI 121 Query: 122 ALSGTGSIIMAMKEDGQYLRNYDFHHYTGSGARFLAYDAAYEMLAGHTDETDREMIKDML 181 + GTGS ++R + G F+ D A G RE++++ L Sbjct: 122 VILGTGS---------AFVRQVQGTAESIGGRGFMLSDHAGGARLG------RELLEETL 166 Query: 182 CHW-GAGTIQELWQLARTGFIEDRR---NRDRK-----FEQFAPFITEAASKGSSLAGRV 232 + G + EL + F +D R + RK + FAP + E +KG L + Sbjct: 167 LAFDGMASRTELTEAVMVRFNDDLRQIISFSRKATAADYAIFAPLVFEYVAKGDPLGLSI 226 Query: 233 SDRAIYQLKVGIELL 247 ++RA +K G++ L Sbjct: 227 AERACAYIKKGLDRL 241 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 493,864,657 Number of extensions: 19458310 Number of successful extensions: 45645 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 45656 Number of HSP's successfully gapped: 18 Length of query: 340 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 214 Effective length of database: 415,135,104 Effective search space: 88838912256 Effective search space used: 88838912256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)