BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0045.0004.p (811 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_146910.1| phosphoenolpyruvate synthase [Aeropyrum pernix]... 147 1e-33 ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus A... 142 3e-32 ref|NP_931674.1| hypothetical protein [Photorhabdus luminescens ... 142 4e-32 ref|NP_469777.1| similar to phosphoenolpyruvate synthase [Lister... 138 6e-31 ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis... 132 3e-29 >ref|NP_146910.1| phosphoenolpyruvate synthase [Aeropyrum pernix] pir||E72754 probable phosphoenolpyruvate synthase APE0026 - Aeropyrum pernix (strain K1) dbj|BAA78935.1| 622aa long hypothetical phosphoenolpyruvate synthase [Aeropyrum pernix] Length = 622 Score = 147 bits (371), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/281 (34%), Positives = 143/281 (50%), Gaps = 36/281 (12%) Query: 5 VAGFREITPQLREQAGGKGAMLSLLYQQGYPVPEGFVV--------------------FP 44 V R+ T ++ GGK A L L + G PVP GFVV F Sbjct: 10 VVDLRDATRKIIHMVGGKAASLGELLEHGLPVPPGFVVTTRAYDLFVEKNGLKSVIENFS 69 Query: 45 EALQGGVIE------EAVREEILAQLSAIRSKHPGAAFAVRSSGLGEDAAGASFAGEFES 98 A Q ++ E RE + A A S+ G AVRSS ED A+FAG+ ++ Sbjct: 70 GANQAAILRRLILEGEVPREVVEAIREAYYSRGDGRV-AVRSSATVEDLPEAAFAGQHDT 128 Query: 99 VLGVETDDQLWAALDTVYQSQFAERVQVYNSSIQGDHEVRSMAVVIQRMILSELSGVLFT 158 L VE D++ A+ + S +++R Y S+ H MAV++QRM+ +++SGV+FT Sbjct: 129 FLNVEGIDRVVEAVKKCWASLWSDRAVAYRESLGVSHSKAKMAVIVQRMVDADVSGVMFT 188 Query: 159 ADPITGSRLEMQGNYVHGLGEQLVSGEANANVFTVSRPKGRYK---------GPLECKKI 209 A+P+TG R E+ N GLGE +VSG + + + + + +K P+ + Sbjct: 189 ANPVTGVREEVVVNAFRGLGESIVSGVVTPDHYVLVKTRFGWKIVEKRISGDKPVLDDRT 248 Query: 210 ASRLYRYARRIERQTGCPQDIEWAAVQGKVYLLQARPITTL 250 RL RI+R G PQDIEWA +G++Y+LQ+RPIT+L Sbjct: 249 LVRLASIGARIQRLFGTPQDIEWALEKGRIYILQSRPITSL 289 >ref|NP_832830.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] gb|AAP10031.1| Phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579] Length = 868 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 118/359 (32%), Positives = 161/359 (44%), Gaps = 77/359 (21%) Query: 1 MSSKVAGFREITPQLREQAGGKGAMLSLLYQ-QGYPVPEGFVV----FPEAL-------- 47 MSS V F+EI GGKG L L QG VPEGF V + +A+ Sbjct: 1 MSSFVLDFQEIEKTQLFLVGGKGLNLGELSNIQGIQVPEGFCVTTVGYEQAIGKNGAFQT 60 Query: 48 --------------QGGVIEEAVREEILA-------------QLSAIRSKHPGAAFAVRS 80 + G I + +RE I+A LS +H A+AVRS Sbjct: 61 LLNQLAMLKIEERDRIGEISKQIREVIMAVEIPVDVVESVAHYLSHFGDEH---AYAVRS 117 Query: 81 SGLGEDAAGASFAGEFESVLGVETDDQLWAALDTVYQSQFAERVQVYNSSIQGDHEVRSM 140 S ED ASFAG+ ++ L V + + + + S F +R +Y DH S+ Sbjct: 118 SATAEDLPYASFAGQQDTYLNVIGKENILQHIKKCWASLFTDRAVIYRMQNGFDHNQVSI 177 Query: 141 AVVIQRMILSELSGVLFTADPITGSRLEMQGNYVHGLGEQLVSGEANANVFTVSRPK--- 197 VVIQ+M+ E SG+LFTADPIT +R + + GLGE LVSG +A+ + V + Sbjct: 178 CVVIQKMVFPEASGILFTADPITSNRKVLSIDASFGLGEALVSGLVSADNYKVKEDEIVE 237 Query: 198 -----------GRYKGPLECKKIAS--------------RLYRYARRIERQTGCPQDIEW 232 GR +G E KKIA +L R R+IE GCPQDIEW Sbjct: 238 KVIATKKLAIYGRKEGGTERKKIAPNQQKFQTLTEQQILQLARIGRQIEAYFGCPQDIEW 297 Query: 233 AAVQGKVYLLQARPITTLSAGNLDHFECNDSMTGDFLWTNTNVGESIADVFTPLSWSFL 291 V +Y++Q+RPITTL E ND + ++ + + + D PL SF Sbjct: 298 CLVDDTIYIVQSRPITTLYPIP----EVNDG--ENHVYISVGHQQMMTDAMKPLGLSFF 350 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 86/314 (27%), Positives = 143/314 (45%), Gaps = 59/314 (18%) Query: 493 YLQKYGHRGPHEFELSIAEPAEDEFWLTRQLEQSGDLPIQVEELVNHQQQLYDAAWKRA- 551 +L KYG R E +++ TR EQ + + ++NH + A KR Sbjct: 577 FLNKYGMRCSGEIDIT----------KTRWSEQPATI---IPMILNHIRDFEYGASKRKF 623 Query: 552 -EG-KISMKRE-QLRRRIQSVAEGP-KVREAVR-----------SEWTRVFRLNRAFALK 596 EG + ++K+E +L R+Q + +G KV E R E+ + ++R F K Sbjct: 624 EEGLQEALKKEKELLERLQHLPDGEQKVEETKRMICNLRNFIGYREYPKYGMIHRYFIYK 683 Query: 597 AGQLAGIG-----------EEVFFLYLDEILKWLADGDLPMLQHVAARKETYAKYQALPP 645 L E++++L +E+ + + L + + +K Y Y+ L P Sbjct: 684 QALLKEAEKLVQNNVLNEIEDIYYLTFEELHEVVRTNKLDY-KIIHKQKNAYKLYEKLTP 742 Query: 646 LPSVIRGRFDPFLWSKDPDRRVDAYDSEAPVQAFRSMDADVLRGFPGAAGRVEGIVRVLA 705 P VI + D + Y E ++ A+ + G P ++G VEG RV+ Sbjct: 743 -PRVI---------TSDGEIITGKYKRE-------NLPAEAIVGLPVSSGVVEGRARVIL 785 Query: 706 TPAEGKQLLPGEILVAAKTNVGWTLCFPKAAAIITDIGAPLSHAAIVARELGIPAVVGCG 765 E L G+ILV A T+ GWT F ++T++G ++H A++ARE G+PAVVG Sbjct: 786 N-MEDANLEDGDILVTAFTDPGWTPLFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVE 844 Query: 766 DASVRLKTGDRVIV 779 +A+ +K G R+ V Sbjct: 845 NATKLIKDGQRIRV 858 >ref|NP_931674.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE16880.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 921 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 113/384 (29%), Positives = 160/384 (41%), Gaps = 90/384 (23%) Query: 20 GGKGAMLSLLYQQGYPVPEGFVVFPEALQGGVIEEAVREEILAQLSAI------------ 67 GGK A L L Q G+PVP +V+ E L +I + I+ QL+ + Sbjct: 26 GGKAANLLWLTQNGFPVPNYWVISSEVLNNLLINDTFASNIIEQLATVPHDISQEKLDAI 85 Query: 68 ------------------------RSKHPGAAFAVRSSGLGEDAAGASFAGEFESVLGVE 103 HP FAVRSS +GEDAA ASFAG+ +S L Sbjct: 86 AAPLRQWLQSIPLPAKLEEELALLSENHPDEFFAVRSSAIGEDAANASFAGQMDSYLFQR 145 Query: 104 TDDQLWAALDTVYQSQFAERVQVYNSSIQGDHEVRSMAVVIQRMILSELSGVLFTADPIT 163 L +L V S F R Y + S AV+IQ M+ E+SGV+FTA P+T Sbjct: 146 GKSALANSLRAVMASAFNTRALQYRLHKRLPMGNISSAVIIQNMVAGEVSGVMFTAHPVT 205 Query: 164 GSRLEMQGNYVHGLGEQLVSGEAN----------------------ANVFTVSRPKGRYK 201 GSR + G GE +VSGE + A VF + G Sbjct: 206 GSRQHCLISSAWGTGEGVVSGECDTDEFSVHLTSPEIERHITQKETATVFNTTNGSGTVT 265 Query: 202 GPLECKK------IASRLYRY---ARRIERQTGCPQDIEWAAVQGKVYLLQARPITTLSA 252 P+ +K + +++Y + I GCPQDIEW ++++LQ RPIT L Sbjct: 266 IPVAKEKQSEPTLLDNKIYALRDIGKEIAAARGCPQDIEWTIQNHQIFILQTRPITRLP- 324 Query: 253 GNLDHFECNDSMTGDFLWTNTNVGESIADVFTPLSWSF------------LRALDEEHNV 300 +D ++ N+N+ ES + TPL++SF +RAL Sbjct: 325 ------RLDDKSEHHIIFDNSNIQESYCGITTPLTFSFARAGYATVYEQTIRALGCSDKQ 378 Query: 301 IPGHYLLSGNIC----GRVYSNIS 320 + H + N+ GR+Y NI+ Sbjct: 379 VNQHRSMLENMLGLVKGRIYYNIN 402 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 93/306 (30%), Positives = 151/306 (49%), Gaps = 30/306 (9%) Query: 492 EYLQKYGHRGPHEFELSIAEPAEDEFWLTRQLEQSGDLPIQVEELVNHQQ-----QLYDA 546 +Y++KYG R E +L +D +L L+ + E ++ ++ Q + Sbjct: 605 DYIKKYGDRTMGELKLETITLKQDPSFLFLILKNYLAIDTLTPETLSSRERKLRTQAENT 664 Query: 547 AWKRAEGKISMKR-EQLRRRIQSVAEGPKVREAVRSEWTRVFRLNRAFALKAGQ---LAG 602 A+++ + ++ KR ++ +Q + + + RE +R TR+F L R L+ GQ L G Sbjct: 665 AFQQIQQRLGSKRMNTFKKNLQKLRQAIRHRENMRFTRTRMFGLYRDIFLQLGQAYALEG 724 Query: 603 IGEE---VFFLYLDEILKWLADGDLPMLQH---VAARKETYAKYQAL--PPLPSVIRGRF 654 I E +F+L L+EI +G Q VA RK+ YA Y+ P IRG Sbjct: 725 ILAEPRDIFYLTLEEIYSGY-EGTAIQTQLEPLVAMRKQEYANYETEDEPAHHFFIRGSL 783 Query: 655 DPFLWSKDPDRRVDAYDSEAPVQAFRSMDADVLRGFPGAAGRVEGIVRVLATPAEGKQLL 714 + D + +AP D+ +L+G G+VE +R++ P + + L Sbjct: 784 -----YQQQDYSYPYQEQQAPT------DSSMLQGIGCYPGQVETTIRLIKNP-QDEMSL 831 Query: 715 PGEILVAAKTNVGWTLCFPKAAAIITDIGAPLSHAAIVARELGIPAVVGCGDASVRLKTG 774 G+IL +T+ GW FP A ++ + G+ LSH+A+VARELGIPA+VG + LK G Sbjct: 832 AGQILCTVRTDPGWAPLFPTAGGLLIERGSTLSHSAVVARELGIPAIVGIPAVTQILKDG 891 Query: 775 DRVIVD 780 DRV +D Sbjct: 892 DRVRMD 897 >ref|NP_469777.1| similar to phosphoenolpyruvate synthase [Listeria innocua] pir||AI1486 phosphoenolpyruvate synthase homolog lin0432 [imported] - Listeria innocua (strain Clip11262) emb|CAC95665.1| lin0432 [Listeria innocua] Length = 866 Score = 138 bits (348), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 140/315 (44%), Gaps = 65/315 (20%) Query: 1 MSSKVAGFREITPQLREQAGGKGAMLSLLYQ-QGYPVPEGFVVFPEALQGGVIEEAVREE 59 M+S V F+E GGKG LS + QG VP GF V EA + V E ++ Sbjct: 1 MTSYVLKFQETNETNEALVGGKGMNLSECAKIQGVRVPAGFSVTTEAYKETVAENHEFKQ 60 Query: 60 ILAQLS------------------------------------AIRSKHPGAAFAVRSSGL 83 +L QL+ AI + AAFAVRSS Sbjct: 61 LLEQLTLQENENTADIREISAKIRTLIQNIPIAPEISVEIDAAIMNIDASAAFAVRSSAT 120 Query: 84 GEDAAGASFAGEFESVLGVETDDQLWAALDTVYQSQFAERVQVYNSSIQGDHEVRSMAVV 143 ED SFAG+ ++ L + D++ + + S F ER +Y + +H +AVV Sbjct: 121 AEDLPHTSFAGQHDTYLNIIGIDEILRHISKCWASLFTERAIIYRNENHFEHSKVHLAVV 180 Query: 144 IQRMILSELSGVLFTADPITGSRLEMQGNYVHGLGEQLVSGEANANVFTVS--------- 194 +Q MI E SG+LFTADPIT +R + + GLGE LVSG +A+ +T+ Sbjct: 181 VQEMIFPEASGILFTADPITSNRKSLAIDASFGLGEALVSGLVSADSYTIQENTITNKII 240 Query: 195 ----------RPKGRYKGPLECKKIASR---------LYRYARRIERQTGCPQDIEWAAV 235 + G PLE K ++ L + R +E PQDIEW Sbjct: 241 ATKKIAIYGLKEGGTETRPLEPSKQTAQTLTDEQILTLAKLGRTVEAHFNKPQDIEWCLA 300 Query: 236 QGKVYLLQARPITTL 250 QG+ Y++Q+RPITTL Sbjct: 301 QGQFYIVQSRPITTL 315 Score = 94.7 bits (234), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 78/313 (24%), Positives = 141/313 (45%), Gaps = 51/313 (16%) Query: 491 EEYLQKYGHRGPHEFELSIAEPAEDEFWLTRQLEQSGDLPIQVEELVNHQQQLYDAAWKR 550 E YL+KYG R E +L+ E+ L +P+ + + N + +++ Sbjct: 572 EAYLEKYGMRCAGEIDLTKTRWIENPLAL---------VPLILSNIKNFEPNASKHKFEQ 622 Query: 551 AEGKISMKREQLRRRIQSVAEGPKVREAVRS------------EWTRVFRLNRAFALKAG 598 E + K + L +++ + +G + ++ E+ + +NR F K Sbjct: 623 GEKEAREKEQTLLKQLAELPDGAEKAAETKTKIDTLRNFIGYREYPKYGMINRYFIYKRA 682 Query: 599 QL--------AGI---GEEVFFLYLDEILKWLADGDLPMLQHVAARKETYAKYQALPPLP 647 L +G+ E+++FLY DE L+ + + Q + RK +A Y+ L P Sbjct: 683 LLRAGEELVRSGVISEKEDIYFLYFDE-LREVVRTNKADYQLINTRKSDFASYEKLTP-- 739 Query: 648 SVIRGRFDPFLWSKDPDRRVDAYDSEAPVQAFRSMDADVLRGFPGAAGRVEGIVRVLATP 707 P + + D + Y E ++ + + G P ++G VEG RV+ Sbjct: 740 --------PRILTSDGEMISGQYHRE-------NLPENTILGLPVSSGVVEGRARVILN- 783 Query: 708 AEGKQLLPGEILVAAKTNVGWTLCFPKAAAIITDIGAPLSHAAIVARELGIPAVVGCGDA 767 E L G+ILV A T+ WT F +IT++G ++H A++ARE G+PAVVG +A Sbjct: 784 MEKADLEDGDILVTAFTDPSWTPAFVSIKGLITEVGGLMTHGAVIAREYGLPAVVGVENA 843 Query: 768 SVRLKTGDRVIVD 780 + ++ G R+ ++ Sbjct: 844 TKIIQDGARIRIN 856 >ref|NP_389764.1| phosphoenolpyruvate synthase [Bacillus subtilis] pir||F69681 phosphoenolpyruvate synthase pps - Bacillus subtilis gb|AAB84457.1| PEP synthase [Bacillus subtilis] emb|CAB13775.1| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str. 168] Length = 866 Score = 132 bits (333), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/315 (31%), Positives = 139/315 (44%), Gaps = 65/315 (20%) Query: 1 MSSKVAGFREITPQLREQAGGKGAMLSLLYQ-QGYPVPEGFVVFPEALQGGVIEEAVREE 59 MSS V G EI GGKG L L + QG VPEGF V Q + + + Sbjct: 1 MSSLVLGLHEIEKTQLSLVGGKGLHLGELSKIQGIQVPEGFCVTTVGYQKAIEQNETLQV 60 Query: 60 ILAQLSAIRSKHPGA------------------------------------AFAVRSSGL 83 +L QL+ ++ + A+AVRSS Sbjct: 61 LLDQLTMLKVEDRDQIGNISRKIRQIIMEVDIPSDVVKAVAQYLSQFGEEHAYAVRSSAT 120 Query: 84 GEDAAGASFAGEFESVLGVETDDQLWAALDTVYQSQFAERVQVYNSSIQGDHEVRSMAVV 143 ED ASFAG+ ++ L + D + + + S F +R +Y DH ++V+ Sbjct: 121 AEDLPHASFAGQQDTYLNITGVDAILQHISKCWASLFTDRAVIYRMQNGFDHSQVYLSVI 180 Query: 144 IQRMILSELSGVLFTADPITGSRLEMQGNYVHGLGEQLVSGEANANVFTVSRPK------ 197 +QRM+ + SG+LFTADPIT +R + + GLGE LVSG +A+ F V + Sbjct: 181 VQRMVFPQASGILFTADPITSNRKVLSIDAGFGLGEALVSGLVSADCFKVQDGQIIDKRI 240 Query: 198 --------GRYKGPLECKKIAS--------------RLYRYARRIERQTGCPQDIEWAAV 235 GR +G E ++I S +L R R+IE G PQDIEW Sbjct: 241 ATKKMAIYGRKEGGTETQQIDSDQQKAQTLTDEQILQLARIGRQIEAHFGQPQDIEWCLA 300 Query: 236 QGKVYLLQARPITTL 250 + Y++Q+RPITTL Sbjct: 301 RDTFYIVQSRPITTL 315 Score = 88.2 bits (217), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 77/311 (24%), Positives = 142/311 (45%), Gaps = 51/311 (16%) Query: 492 EYLQKYGHRGPHEFELSIAEPAEDEFWLTRQLEQSGDLPIQVEELVNHQQQLYDAAWKRA 551 +YL KYG R E +++ +E L +P+ + + N + + +++ Sbjct: 574 DYLSKYGMRCTGEIDITRTRWSEKPTTL---------VPMILNNIKNFEPNVGHRKFEQG 624 Query: 552 EGKISMKREQLRRRIQSVAEGP-KVREAVRS-----------EWTRVFRLNRAFALKAGQ 599 + K ++L R++ + +G K +E R+ E+ + +NR F K Sbjct: 625 RQEALKKEQELLDRLKQLPDGEQKAKETKRAIDIIRNFSGFREYPKYGMVNRYFVYKQAL 684 Query: 600 L--------AGI---GEEVFFLYLDEILKWLADGDLPMLQHVAARKETYAKYQALPPLPS 648 L AG+ E++++L +E+ + + L Q ++ RK+ Y Y+ L P Sbjct: 685 LKEAEQLIEAGVIHEKEDIYYLTFEELHEVVRTHKLDY-QIISTRKDEYTLYEKLSP--- 740 Query: 649 VIRGRFDPFLWSKDPDRRVDAYDSEAPVQAFRSMDADVLRGFPGAAGRVEGIVRVLATPA 708 P + + D + Y E ++ A + G P ++G +EG RV+ Sbjct: 741 -------PRVITSDGEIVTGEYKRE-------NLPAGAIVGLPVSSGVIEGRARVILN-M 785 Query: 709 EGKQLLPGEILVAAKTNVGWTLCFPKAAAIITDIGAPLSHAAIVARELGIPAVVGCGDAS 768 E L G+ILV + T+ WT F ++T++G ++H A++ARE G+PAVVG +A+ Sbjct: 786 EDADLEDGDILVTSFTDPSWTPLFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENAA 845 Query: 769 VRLKTGDRVIV 779 +K G R+ V Sbjct: 846 KLIKDGQRIRV 856 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,114,544,776 Number of extensions: 45490601 Number of successful extensions: 113456 Number of sequences better than 1.0e-05: 204 Number of HSP's gapped: 113510 Number of HSP's successfully gapped: 323 Length of query: 811 Length of database: 757,237,578 Length adjustment: 134 Effective length of query: 677 Effective length of database: 393,414,312 Effective search space: 266341489224 Effective search space used: 266341489224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)