BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0044.0014.p (414 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00184047.1| hypothetical protein Exigu045801 [Exiguobacte... 268 2e-70 gb|AAK84427.1| putative serine protease HtrA [Listeria monocytog... 268 2e-70 ref|NP_463823.1| similar to heat-shock protein htrA serine prote... 267 3e-70 ref|NP_391916.1| alternate gene name: yycK~similar to serine pro... 267 4e-70 ref|NP_469665.1| similar to heat-shock protein htrA serine prote... 264 4e-69 >ref|ZP_00184047.1| hypothetical protein Exigu045801 [Exiguobacterium sp. 255-15] Length = 432 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 158/381 (41%), Positives = 232/381 (60%), Gaps = 12/381 (3%) Query: 33 PRRSRRGLATWQVAMICSVVSAV-TAVLLFSLVTGQLTHEKAESPAVIGKVAASSGDPYD 91 P+R R G + V +I ++ A+ A++ + V ++T S A + A + + + Sbjct: 51 PKR-RGGGKAFFVGLIGGIIGALLIALIAWPFVRDEMTSPTPVSNATPEQAATKATESEN 109 Query: 92 RIIQAAALVRPAVVSIINHKEDNKELNILDESALGSGVIYKKDDGKAFIITNNHVIEGAG 151 I+ A + AVVS+ N + + + E+ GSGVIYKKD KA+++TN HV+EGA Sbjct: 110 DIVSAVGQTKEAVVSVTNLQSSFQGAD--QETGAGSGVIYKKDGNKAYVVTNYHVVEGAS 167 Query: 152 KLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSKLRLGETVIAIGNPL 211 +L V +G +A ++G D D+AVLSIDA + V ++GDS LR GETV+AIGNPL Sbjct: 168 RLSVTLSDGTALEAKVLGEDPTYDLAVLSIDASKVTQVVKLGDSDTLRAGETVLAIGNPL 227 Query: 212 GL-GDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEGNSGGALVDLNGKVIG 270 G+ +++T G++S ERT+PV N+DG D+ EVIQTDAAIN GNSGGAL++ +G++IG Sbjct: 228 GIFANSVTRGVISAQERTVPVDTNKDGQQDFNTEVIQTDAAINPGNSGGALINTSGQLIG 287 Query: 271 INTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYSVDLNNPYVPLAEDQR 330 IN+MKI++ VEG+GFAIP N + +L G++ R LG+ D+ ED+ Sbjct: 288 INSMKIAEASVEGVGFAIPINEALPIMRDLEQNGEVIRPQLGIQIRDVQEFPSGFREDR- 346 Query: 331 KELNLPDSVKDGVVVLDAV---GPAKVAGLQLNDVITKFDNQSITSTLSLRKYLYDHTKI 387 L LP V G+VV+ G AK AG++ NDVI + + + I S L+ LY K+ Sbjct: 347 --LKLPSDVNRGIVVVGLTKNSGAAK-AGMKENDVIVEINGKDIRSFADLKSVLYRDAKV 403 Query: 388 GDELKITFYRNGEVKQVTVKL 408 GD +K+TFYR GE + + VKL Sbjct: 404 GDNVKVTFYRGGEKQTLDVKL 424 >gb|AAK84427.1| putative serine protease HtrA [Listeria monocytogenes] Length = 542 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 156/337 (46%), Positives = 217/337 (64%), Gaps = 13/337 (3%) Query: 81 KVAASSGDPYDRIIQAAALVRPAVVSIINHKEDNK---ELNILDESALGSGVIYKKDDGK 137 KV S D + +A V+ AVVS++N++ + E++ GSGVIYKK +GK Sbjct: 203 KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGK 262 Query: 138 AFIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSK 197 A+I+TNNHV+ A KLEV NG+ +A L+G D+ +D+AVL ID + + TVA GDS Sbjct: 263 AYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDS 322 Query: 198 LRLGETVIAIGNPLG--LGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEG 255 L+LGE IAIG+PLG ++T GI+S R +PV N DG DWE +VIQTDAAIN G Sbjct: 323 LKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPG 382 Query: 256 NSGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYS 315 NSGGAL+++ G+VIGIN+MKIS VEG+ FAIP+N V ++L KG++ R LGV Sbjct: 383 NSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSL 442 Query: 316 VDLNNPYVPLAEDQRKE-LNLPDSVKDGVVVLDAV--GPAKVAGLQLNDVITKFDNQSIT 372 D++ + E Q+K L LPDSV G +V V A AGL+ DVI + + Q +T Sbjct: 443 RDVDT----IPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVT 498 Query: 373 STLSLRKYLY-DHTKIGDELKITFYRNGEVKQVTVKL 408 ++++LRK LY + KIGD++K+ +YR+G+ K +KL Sbjct: 499 NSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKL 535 >ref|NP_463823.1| similar to heat-shock protein htrA serine protease [Listeria monocytogenes EGD-e] pir||AE1111 heat-shock protein htrA serine proteinase homolog lmo0292 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00819.1| lmo0292 [Listeria monocytogenes] Length = 500 Score = 267 bits (683), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/337 (46%), Positives = 217/337 (64%), Gaps = 13/337 (3%) Query: 81 KVAASSGDPYDRIIQAAALVRPAVVSIINHKEDNK---ELNILDESALGSGVIYKKDDGK 137 KV S D + +A V+ AVVS++N++ + E++ GSGVIYKK +GK Sbjct: 161 KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKANGK 220 Query: 138 AFIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSK 197 A+I+TNNHV+ A KLEV NG+ +A L+G D+ +D+AVL ID + + TVA GDS Sbjct: 221 AYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFGDSDS 280 Query: 198 LRLGETVIAIGNPLG--LGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEG 255 L+LGE IAIG+PLG ++T GI+S R +PV N DG DWE +VIQTDAAIN G Sbjct: 281 LKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPG 340 Query: 256 NSGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYS 315 NSGGAL+++ G+VIGIN+MKIS VEG+ FAIP+N V ++L KG++ R LGV Sbjct: 341 NSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSL 400 Query: 316 VDLNNPYVPLAEDQRKE-LNLPDSVKDGVVVLDAV--GPAKVAGLQLNDVITKFDNQSIT 372 D++ + E Q+K L LPDSV G +V V A AGL+ DVI + + Q +T Sbjct: 401 RDVDT----IPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGQKVT 456 Query: 373 STLSLRKYLY-DHTKIGDELKITFYRNGEVKQVTVKL 408 ++++LRK LY + KIGD++K+ +YR+G+ K +KL Sbjct: 457 NSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKL 493 >ref|NP_391916.1| alternate gene name: yycK~similar to serine protease Do [Bacillus subtilis] sp|P39668|YYXA_BACSU Hypothetical serine protease yyxA pir||B70092 serine proteinase Do homolog yyxA - Bacillus subtilis dbj|BAA11295.1| homologous to sp:HTRA_ECOLI [Bacillus subtilis] emb|CAB16073.1| yyxA [Bacillus subtilis subsp. subtilis str. 168] Length = 400 Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 162/395 (41%), Positives = 242/395 (61%), Gaps = 37/395 (9%) Query: 33 PRRSRRGLATWQVAMICSVVSAVTAVLLFSLVTGQLTHEKAESPAV-----------IGK 81 P+RS++G + S++ + +L + + L++E ++ A+ I Sbjct: 16 PKRSKKGY------FLSSLIGVIVGAVLMAFIMPYLSNEGLDTGALDQQQNNNGRESIRT 69 Query: 82 VAASSGDPYDRIIQAAALVRPAVVSIINHKEDNKELNILDESA---LGSGVIYKKDDGKA 138 V S + +I+ + PAVV ++N ++ + I ES GSGVIYKK+D A Sbjct: 70 VNVSVNNAVTKIVSNMS---PAVVGVVNIQKSD----IWGESGEAGSGSGVIYKKNDHSA 122 Query: 139 FIITNNHVIEGAGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSKL 198 +++TN+HVIEGA ++E+ +G A LVG+D++ D+AVL + ++ IK VA G+S K+ Sbjct: 123 YVVTNHHVIEGASQIEISLKDGSRVSADLVGSDQLMDLAVLRVKSDKIKAVADFGNSDKV 182 Query: 199 RLGETVIAIGNPLGL--GDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEGN 256 + GE VIAIGNPLGL ++T G++S TER IPV N DG DW EV+QTDAAIN GN Sbjct: 183 KSGEPVIAIGNPLGLEFAGSVTQGVISGTERAIPVDSNGDGQPDWNAEVLQTDAAINPGN 242 Query: 257 SGGALVDLNGKVIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYSV 316 SGGAL++++GKVIGIN+MKI+++ VEG+G +IP+ V+ ++L GK+ R +LG+ Sbjct: 243 SGGALLNMDGKVIGINSMKIAESAVEGIGLSIPSKLVIPVIEDLERYGKVKRPFLGIEMK 302 Query: 317 DLNNPYVPLAEDQRKE-LNLPDSVKDGVVVL--DAVGPAKVAGLQLNDVITKFDNQSITS 373 L++ +A E L LP +V +G VV+ DA PA AGL+ DVIT+FD + Sbjct: 303 SLSD----IASYHWDETLKLPKNVTNGAVVMGVDAFSPAGKAGLKELDVITEFDGYKVND 358 Query: 374 TLSLRKYLYDHTKIGDELKITFYRNGEVKQVTVKL 408 + LRK LY K+GD +K+ FYR G+ K V +KL Sbjct: 359 IVDLRKRLY-QKKVGDRVKVKFYRGGKEKSVDIKL 392 >ref|NP_469665.1| similar to heat-shock protein htrA serine protease [Listeria innocua] pir||AI1472 heat-shock protein htrA serine proteinase homolog lin0320 [imported] - Listeria innocua (strain Clip11262) emb|CAC95553.1| lin0320 [Listeria innocua] Length = 499 Score = 264 bits (674), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 150/325 (46%), Positives = 214/325 (65%), Gaps = 13/325 (4%) Query: 93 IIQAAALVRPAVVSIINHKEDNK---ELNILDESALGSGVIYKKDDGKAFIITNNHVIEG 149 + +A V+ AVVS++N++ + + E++ GSGVIYKK +GKA+I+TNNHV+ Sbjct: 172 VTKAVDKVQDAVVSVLNYQSSSSLDGTTSSEKEASSGSGVIYKKANGKAYIVTNNHVVAD 231 Query: 150 AGKLEVVTVNGETRKATLVGADKVSDIAVLSIDAEGIKTVAQIGDSSKLRLGETVIAIGN 209 A KLEV NG+ +A L+G D+ +D+AVL ID + + TVA GDS L+LGE IAIG+ Sbjct: 232 ANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVSTVATFGDSDSLKLGEPAIAIGS 291 Query: 210 PLG--LGDTLTSGIVSYTERTIPVSLNQDGVYDWEQEVIQTDAAINEGNSGGALVDLNGK 267 PLG ++T GI+S R +PV N DG DWE +VIQTDAAIN GNSGGAL+++ G+ Sbjct: 292 PLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTDAAINPGNSGGALINIEGQ 351 Query: 268 VIGINTMKISDTGVEGLGFAIPANHVMETADELAAKGKIARSYLGVYSVDLNNPYVPLAE 327 VIGIN+MKIS VEG+ FAIP+N V ++L KG++ R LGV D++ + E Sbjct: 352 VIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVERPSLGVSLRDVDT----IPE 407 Query: 328 DQRKE-LNLPDSVKDGVVVLDAV--GPAKVAGLQLNDVITKFDNQSITSTLSLRKYLY-D 383 Q+K L LPDSV G +V V A AGL+ DVI + + + +T++++LRK LY + Sbjct: 408 TQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVELNGEKVTNSMTLRKILYGN 467 Query: 384 HTKIGDELKITFYRNGEVKQVTVKL 408 KIGD++K+ +YR+G+ + +KL Sbjct: 468 DVKIGDKVKVKYYRDGKEQSTDIKL 492 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 606,272,351 Number of extensions: 25600674 Number of successful extensions: 66106 Number of sequences better than 1.0e-05: 1246 Number of HSP's gapped: 63064 Number of HSP's successfully gapped: 1248 Length of query: 414 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 286 Effective length of database: 409,704,906 Effective search space: 117175603116 Effective search space used: 117175603116 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)